View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_86 (Length: 244)
Name: NF7337_low_86
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 44726972 - 44727113
Alignment:
| Q |
93 |
tcaatttgatggtcgttattttctacagaatcgtcttagaactgaagtcctctctaatctc-------tatgtattattttccaaatatgttacagacaa |
185 |
Q |
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| T |
44726972 |
tcaatttgatagtctttattttccacagaatcatcttagaactgaagtcctctctagtctctactctctatgtattattttccaaatatgttacagacaa |
44727071 |
T |
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| Q |
186 |
tagacctatacatcaaacctctgttgctgaaacacacaaaat |
227 |
Q |
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| T |
44727072 |
tagacctatacatcaaacctctgttgctgaaacacacaaaat |
44727113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 47843887 - 47843834
Alignment:
| Q |
172 |
tatgttacagacaatagacctatacatcaaacctctgttgctgaaacacacaaaa |
226 |
Q |
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| T |
47843887 |
tatgttacagacatcagacctatacatc-aacctctgatgctgaaacacaaaaaa |
47843834 |
T |
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