View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_90 (Length: 243)
Name: NF7337_low_90
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_90 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 4145953 - 4145718
Alignment:
| Q |
8 |
caatagagcatctcaacgactccacaattcaacaacttcttccacgtgaatttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaa |
107 |
Q |
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| T |
4145953 |
caatagagcatctcaacgactccacaattcaacaacttcttccacgtgaatttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaa |
4145854 |
T |
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| Q |
108 |
tcctagtattcctcaaaaaacaccattttgttacatgttcatggcttttctaagtcataacaaaaaccacttgttcataacattcctcatattttgcaca |
207 |
Q |
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| T |
4145853 |
tcctagtattcctcaaaaaacaccattttgttacatgttcatggcttttctaagtcataacaaaaaccacttgttcataacattcctcatattttgcaca |
4145754 |
T |
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| Q |
208 |
ttttattcatgttatagtgctgtcaatgactctatt |
243 |
Q |
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| T |
4145753 |
ttttattcatgttatagtgctgtcaacgacactatt |
4145718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 4124482 - 4124377
Alignment:
| Q |
132 |
attttgttacatgttcatggcttttctaagtcataacaaaaaccacttgttcataacattcctcatattttgcacattttattcatgttatagtgctgtc |
231 |
Q |
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| T |
4124482 |
attttgttacacattaatggcttttctacgtcataatacaaatgacttattcattacagtcctcatattttgcaccttttattcatgttatagtgcaatc |
4124383 |
T |
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| Q |
232 |
aatgac |
237 |
Q |
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| T |
4124382 |
aatgac |
4124377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 4135027 - 4134934
Alignment:
| Q |
133 |
ttttgttacatgttcatggctttt-ctaagtcataacaaaaaccacttgttcataacattcctcatattttgcacattttattcatgttatagt |
225 |
Q |
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| T |
4135027 |
ttttgttacacatttatggctttttctaagtcataatataaatgacttattcattacattcctcatattttgcacattttattcatgttatagt |
4134934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 4153885 - 4153727
Alignment:
| Q |
89 |
ctcatcaaaccaaattaaatcctagtattcctcaaaaaacaccat-------tttgttacatgttcatggcttttctaagtcataacaaaaaccacttgt |
181 |
Q |
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| T |
4153885 |
ctcattaaaccaaactaaatcctagtattcctcaaaaaacatcatacaacaatctgttacacatttatggcttttctaagtcacaattcaaattacttct |
4153786 |
T |
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| Q |
182 |
tcata---acattcctcatattttgcacattttattcatgttatagtgctgtcaatgac |
237 |
Q |
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| T |
4153785 |
tcataattactttccttatattttgcacaatttattcatgttatagtgcaatcaatgac |
4153727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 4164236 - 4164098
Alignment:
| Q |
95 |
aaaccaaattaaatcctagtattcctcaaaaaa-cacc----attttgttacatgttcatggcttttctaagtcataacaaaaaccacttgttcataa-- |
187 |
Q |
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| T |
4164236 |
aaaccaaactaaattctagtattcctcaaaaaaacacctaacaatttgttatccatttatggcttttctaattcacaacacaaaccacttcttcataatt |
4164137 |
T |
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| Q |
188 |
-cattcctcatattttgcacattttattcatgttatagt |
225 |
Q |
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| T |
4164136 |
acgttcatcatatttagcaccttttattcatgttatagt |
4164098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 4124568 - 4124500
Alignment:
| Q |
58 |
tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaa |
127 |
Q |
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| T |
4124568 |
tttgaataggaatatgttacaaattacaaa-ctcatcaaaccaaactaagttctagtattcctcaaaaaa |
4124500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 4135160 - 4135044
Alignment:
| Q |
17 |
atctcaacgactccacaattcaacaa---cttcttccacgtgaa--tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcct |
111 |
Q |
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| T |
4135160 |
atctcaatgacgccacaattcaacaataacatcttccacatgatagtttgattaggaacatgttacaaattacaaa-ctcataaagcctatctaagttct |
4135062 |
T |
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| Q |
112 |
agtattcctcaaaaaaca |
129 |
Q |
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| T |
4135061 |
agtattcctcaaaaaaca |
4135044 |
T |
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