View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7337_low_92 (Length: 242)

Name: NF7337_low_92
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7337_low_92
NF7337_low_92
[»] chr3 (2 HSPs)
chr3 (37-74)||(30710576-30710613)
chr3 (37-68)||(43715239-43715270)
[»] chr2 (4 HSPs)
chr2 (37-70)||(34451481-34451514)
chr2 (37-68)||(14523521-14523552)
chr2 (37-68)||(17695261-17695292)
chr2 (31-64)||(17122929-17122962)
[»] chr5 (3 HSPs)
chr5 (36-68)||(41492191-41492223)
chr5 (37-68)||(1248753-1248784)
chr5 (37-68)||(2588212-2588243)
[»] chr1 (8 HSPs)
chr1 (36-68)||(31042730-31042762)
chr1 (37-68)||(15699073-15699104)
chr1 (37-68)||(37506057-37506088)
chr1 (31-64)||(26258089-26258122)
chr1 (37-66)||(37275536-37275565)
chr1 (37-66)||(40145001-40145030)
chr1 (32-64)||(2981994-2982026)
chr1 (36-68)||(41121976-41122008)
[»] chr7 (7 HSPs)
chr7 (37-68)||(6495091-6495122)
chr7 (37-68)||(21760142-21760173)
chr7 (37-68)||(31930660-31930691)
chr7 (37-68)||(43873863-43873894)
chr7 (35-68)||(38391692-38391725)
chr7 (37-70)||(47045623-47045656)
chr7 (36-68)||(28202466-28202498)
[»] chr6 (4 HSPs)
chr6 (37-68)||(11656097-11656128)
chr6 (36-73)||(7808394-7808431)
chr6 (37-66)||(23397767-23397796)
chr6 (36-64)||(34299931-34299959)
[»] chr4 (3 HSPs)
chr4 (37-68)||(5841585-5841616)
chr4 (37-68)||(25233115-25233146)
chr4 (36-68)||(26147774-26147806)
[»] chr8 (3 HSPs)
chr8 (37-67)||(4428501-4428531)
chr8 (41-75)||(40109639-40109673)
chr8 (37-66)||(39405697-39405726)
[»] scaffold0095 (1 HSPs)
scaffold0095 (37-66)||(50139-50168)


Alignment Details
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 30710613 - 30710576
Alignment:
Q  37 attgatattctaaagtgacaattattttgagatatata 74  Q
    |||||||||||||||||||||||||||||||| |||||    
T  30710613 attgatattctaaagtgacaattattttgagacatata 30710576  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 43715270 - 43715239
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  43715270 attgatattctaaagtgacaattattttgaga 43715239  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 34451481 - 34451514
Alignment:
Q  37 attgatattctaaagtgacaattattttgagata 70  Q
    ||||||||||||||||||||||||||||||||||    
T  34451481 attgatattctaaagtgacaattattttgagata 34451514  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 14523521 - 14523552
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  14523521 attgatattctaaagtgacaattattttgaga 14523552  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 17695292 - 17695261
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  17695292 attgatattctaaagtgacaattattttgaga 17695261  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 17122962 - 17122929
Alignment:
Q  31 tattatattgatattctaaagtgacaattatttt 64  Q
    ||||| ||||||||||||||||||||||||||||    
T  17122962 tattacattgatattctaaagtgacaattatttt 17122929  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 41492223 - 41492191
Alignment:
Q  36 tattgatattctaaagtgacaattattttgaga 68  Q
    |||||||||||||||||||||||||||||||||    
T  41492223 tattgatattctaaagtgacaattattttgaga 41492191  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 1248753 - 1248784
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  1248753 attgatattctaaagtgacaattattttgaga 1248784  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 2588212 - 2588243
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  2588212 attgatattctaaagtgacaattattttgaga 2588243  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 31042762 - 31042730
Alignment:
Q  36 tattgatattctaaagtgacaattattttgaga 68  Q
    |||||||||||||||||||||||||||||||||    
T  31042762 tattgatattctaaagtgacaattattttgaga 31042730  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 15699104 - 15699073
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  15699104 attgatattctaaagtgacaattattttgaga 15699073  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 37506088 - 37506057
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  37506088 attgatattctaaagtgacaattattttgaga 37506057  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 26258089 - 26258122
Alignment:
Q  31 tattatattgatattctaaagtgacaattatttt 64  Q
    |||| |||||||||||||||||||||||||||||    
T  26258089 tattgtattgatattctaaagtgacaattatttt 26258122  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 37275565 - 37275536
Alignment:
Q  37 attgatattctaaagtgacaattattttga 66  Q
    ||||||||||||||||||||||||||||||    
T  37275565 attgatattctaaagtgacaattattttga 37275536  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 40145001 - 40145030
Alignment:
Q  37 attgatattctaaagtgacaattattttga 66  Q
    ||||||||||||||||||||||||||||||    
T  40145001 attgatattctaaagtgacaattattttga 40145030  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 2981994 - 2982026
Alignment:
Q  32 attatattgatattctaaagtgacaattatttt 64  Q
    |||||||||||||| ||||||||||||||||||    
T  2981994 attatattgatattttaaagtgacaattatttt 2982026  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 41121976 - 41122008
Alignment:
Q  36 tattgatattctaaagtgacaattattttgaga 68  Q
    |||||||||| ||||||||||||||||||||||    
T  41121976 tattgatattttaaagtgacaattattttgaga 41122008  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 6495091 - 6495122
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  6495091 attgatattctaaagtgacaattattttgaga 6495122  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 21760142 - 21760173
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  21760142 attgatattctaaagtgacaattattttgaga 21760173  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 31930660 - 31930691
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  31930660 attgatattctaaagtgacaattattttgaga 31930691  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 43873894 - 43873863
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  43873894 attgatattctaaagtgacaattattttgaga 43873863  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 38391725 - 38391692
Alignment:
Q  35 atattgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||| ||||||||||||||||||||||    
T  38391725 atattgatattataaagtgacaattattttgaga 38391692  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 47045623 - 47045656
Alignment:
Q  37 attgatattctaaagtgacaattattttgagata 70  Q
    |||| |||||||||||||||||||||||||||||    
T  47045623 attggtattctaaagtgacaattattttgagata 47045656  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 28202466 - 28202498
Alignment:
Q  36 tattgatattctaaagtgacaattattttgaga 68  Q
    ||||| |||||||||||||||||||||||||||    
T  28202466 tattggtattctaaagtgacaattattttgaga 28202498  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 11656097 - 11656128
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  11656097 attgatattctaaagtgacaattattttgaga 11656128  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 7808394 - 7808431
Alignment:
Q  36 tattgatattctaaagtgacaattattttgagatatat 73  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  7808394 tattgctattctaaattgacaattattttgagatatat 7808431  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 23397767 - 23397796
Alignment:
Q  37 attgatattctaaagtgacaattattttga 66  Q
    ||||||||||||||||||||||||||||||    
T  23397767 attgatattctaaagtgacaattattttga 23397796  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 34299959 - 34299931
Alignment:
Q  36 tattgatattctaaagtgacaattatttt 64  Q
    |||||||||||||||||||||||||||||    
T  34299959 tattgatattctaaagtgacaattatttt 34299931  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 5841585 - 5841616
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  5841585 attgatattctaaagtgacaattattttgaga 5841616  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 25233146 - 25233115
Alignment:
Q  37 attgatattctaaagtgacaattattttgaga 68  Q
    ||||||||||||||||||||||||||||||||    
T  25233146 attgatattctaaagtgacaattattttgaga 25233115  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 26147774 - 26147806
Alignment:
Q  36 tattgatattctaaagtgacaattattttgaga 68  Q
    ||||| |||||||||||||||||||||||||||    
T  26147774 tattggtattctaaagtgacaattattttgaga 26147806  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 4428501 - 4428531
Alignment:
Q  37 attgatattctaaagtgacaattattttgag 67  Q
    |||||||||||||||||||||||||||||||    
T  4428501 attgatattctaaagtgacaattattttgag 4428531  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 40109673 - 40109639
Alignment:
Q  41 atattctaaagtgacaattattttgagatatataa 75  Q
    |||||||||| ||||||||||||||||||||||||    
T  40109673 atattctaaaatgacaattattttgagatatataa 40109639  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 39405726 - 39405697
Alignment:
Q  37 attgatattctaaagtgacaattattttga 66  Q
    ||||||||||||||||||||||||||||||    
T  39405726 attgatattctaaagtgacaattattttga 39405697  T

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Target: scaffold0095 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 50168 - 50139
Alignment:
Q  37 attgatattctaaagtgacaattattttga 66  Q
    ||||||||||||||||||||||||||||||    
T  50168 attgatattctaaagtgacaattattttga 50139  T

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