View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_97 (Length: 237)
Name: NF7337_low_97
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_97 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: scaffold0638 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4655 - 4427
Alignment:
| Q |
1 |
cgcaagtgcatgattggtccatatgtgtgggatagtttgtgcaaatcaagatgagggtttgcccctaacttgagaaggctacccaaaattggcaacccta |
100 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4655 |
cgcaagtgcatgattggtccatatttttgggatagtttgtgcaaatcaagatgagggtttgcccctaacttgagaaggctacccaaaattggcaacccta |
4556 |
T |
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| Q |
101 |
cgggacctggaggcaatctctttaatttattcatgtttctccattgccaaagaaaaggaatagaaacaaggaatattgctatacaaatcaaaatcatgat |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
4555 |
cgggacctggaggcaatctctttactttattcatgtttctccattgccaaagaaaagcaagagaaacaaggaatattgctatacaaatcaaaatcatgat |
4456 |
T |
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| Q |
201 |
agctattttgaaaagagtatgtctctgct |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4455 |
agctattttgaaaagagtatgtctctgct |
4427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27411856 - 27411633
Alignment:
| Q |
1 |
cgcaagtgcatgattggtccatatgtgtgggatagtttgtgcaaatcaagatgagggtttgcccctaacttgagaaggctacccaaaattggcaacccta |
100 |
Q |
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||||||||||| |||||||||||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27411856 |
cgcaagtgcattattggtccatatttttgggatagtttgtgtagatcaagatgagggtttgcccctaacttgagaaggctacccaaaatcggcaacccta |
27411757 |
T |
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| Q |
101 |
cgggacctggaggcaatctctttaatttattcatgtttctccattgccaaagaaaaggaatagaaacaaggaatattgctatacaaatcaaaatcatgat |
200 |
Q |
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| T |
27411756 |
cgggacctggaggcaatctctttactttattcatgtttctccattgcgaaaaaaaagcaagagaaactaggaatattgctatacaaatcaaaatcatgat |
27411657 |
T |
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| Q |
201 |
agctattttgaaaagagtatgtct |
224 |
Q |
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| T |
27411656 |
agctattttgtaaagagtatgtct |
27411633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8826 - 9044
Alignment:
| Q |
1 |
cgcaagtgcatgattggtccatatgtgtgggatagtttgtgcaaatcaagatgagggtttgcccctaacttgagaaggctacccaaaattggcaacccta |
100 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8826 |
cgcaagtgcatgattggtccatatttttgggatagtttgtgtagatcaagatgagggtttgcccctaacttgagaaggctacccaaaattggcactcctt |
8925 |
T |
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| Q |
101 |
cgggacctggaggcaatctctttaatttattcatgtttctccattgccaaagaaaaggaatagaaacaaggaatattgctatacaaatcaaaatcatgat |
200 |
Q |
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| T |
8926 |
ttggacctggaggcaatccctttactttattctcgtttccccatagccaaagacaagcaagagaaactaggaatattgctatacaaatcaaaatcatgat |
9025 |
T |
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| Q |
201 |
agctattttgaaaagagta |
219 |
Q |
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| T |
9026 |
aactattttgcaaagagta |
9044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 38261819 - 38261623
Alignment:
| Q |
4 |
aagtgcatgattggtccatatgtgtgggatagtttgtgcaaatcaagatgagggtttgcccctaacttgagaaggctacccaaaattggcaaccctacgg |
103 |
Q |
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||||||||||||||||||||| | |||||||||| ||| | |||| ||||||||||||| ||||| || |||||||| || |||||||| || ||| | |
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| T |
38261819 |
aagtgcatgattggtccatatttttgggatagttggtgaagatcacgatgagggtttgcacctaattttagaaggctgcctaaaattggtaatccttttg |
38261720 |
T |
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| Q |
104 |
gacctggaggcaatctctttaatttattcatgtttctccattgccaaagaaaaggaatagaaacaaggaatattgctatacaaatcaaaatcatgat |
200 |
Q |
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| T |
38261719 |
gacctggtggtaatttctttgctttggtcttgtttccccatagcagtagaaaggcaagagaaactagaaaaattgatatacaaatcaaaatcatgat |
38261623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 38258062 - 38257944
Alignment:
| Q |
4 |
aagtgcatgattggtccatatgtgtgggatagtttgtgcaaatcaagatgagggtttgcccctaacttgagaaggctacccaaaattggcaaccctacgg |
103 |
Q |
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|||||||| |||||||||||| | |||||||||||||| | |||| |||||||||||| |||| || ||||| ||| |||||||||| || ||| | |
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| T |
38258062 |
aagtgcataattggtccatatttttgggatagtttgtgaagatcacgatgagggtttggtcctagttttagaagacta-ccaaaattggtaatccttttg |
38257964 |
T |
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| Q |
104 |
gacctggaggcaatctcttt |
123 |
Q |
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||||||| |||||| ||||| |
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| T |
38257963 |
gacctggtggcaatttcttt |
38257944 |
T |
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