View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7337_low_98 (Length: 230)
Name: NF7337_low_98
Description: NF7337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7337_low_98 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 46034139 - 46034350
Alignment:
| Q |
1 |
aattgggaaaggaatggtcaatactccgttcgatcagcataccatctgctcaaggaagagacattacgaggcacccctgaagcatcagtaatgtgtaaca |
100 |
Q |
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| T |
46034139 |
aattgggaaaggaatggtcaatactccgttcgatcagcataccatctgctcaaggaagagacattacgaggcacccctgaagcatcagtaacgtgtaaca |
46034238 |
T |
|
| Q |
101 |
ccggtatgtggaaggccatttggaaagttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaactagatgtaagct |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034239 |
ccggtatgtagaaggccatttggaaagttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaactagatgtaagct |
46034338 |
T |
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| Q |
201 |
ggagacaaaagg |
212 |
Q |
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|||||||||||| |
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| T |
46034339 |
ggagacaaaagg |
46034350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 39488017 - 39488228
Alignment:
| Q |
1 |
aattgggaaaggaatggtcaatactccgttcgatcagcataccatctgctcaaggaagagacattacgaggcacccctgaagcatcagtaatgtgtaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
39488017 |
aattgggaaaggaatggtcaatactccgttcgatcagcataccatctactcaaggaagagacattacgaggcacccctgaagtatcagtaacgtgtaaca |
39488116 |
T |
|
| Q |
101 |
ccggtatgtggaaggccatttggaaagttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaactagatgtaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488117 |
ccggtatgtggaaggccatttggaaagttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaactagatgtaagct |
39488216 |
T |
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| Q |
201 |
ggagacaaaagg |
212 |
Q |
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|||||||||||| |
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| T |
39488217 |
ggagacaaaagg |
39488228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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