View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7338_high_1 (Length: 280)
Name: NF7338_high_1
Description: NF7338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7338_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 14945367 - 14945106
Alignment:
| Q |
1 |
caaggtattatgtggcttcatcttactacggttctcataaatgagtgcattcaagatagcatcaaatctattgcttatattttgtaacctcttctctaaa |
100 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14945367 |
caaggtattctctggcttcatcttactacggttctcataaatgagtgcattcaagatagcatcaaatctattgcttatattttgtaacctcttctctaaa |
14945268 |
T |
|
| Q |
101 |
ttctgaaaatcaaaccaccttaaaaatggcaagtaatctgccttgtttgaaacccctgttaatttcaccatctcctcgaccgtctccctaaattccttcg |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14945267 |
ttctgaaaatcaaaccaccttaaaaagggcaagtaatctgccttgtttgaaacccctgttaatttcaccatctcctcaaccgtctccctaaattccttcg |
14945168 |
T |
|
| Q |
201 |
cttctttcgcatccttcgcgtcaatctcttccccatagtatctctttccagatatcatcctc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14945167 |
cttctttcgcatccttcgcgtcaatctcttccccatagtatctctttccagatatcatcctc |
14945106 |
T |
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