View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7338_low_1 (Length: 561)

Name: NF7338_low_1
Description: NF7338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7338_low_1
NF7338_low_1
[»] chr7 (9 HSPs)
chr7 (52-447)||(3703867-3704264)
chr7 (52-283)||(3696490-3696729)
chr7 (339-401)||(3695351-3695413)
chr7 (8-52)||(32706545-32706589)
chr7 (493-546)||(3675876-3675933)
chr7 (12-51)||(9595340-9595379)
chr7 (12-51)||(9646303-9646342)
chr7 (412-446)||(3675975-3676009)
chr7 (338-397)||(3650517-3650577)
[»] chr3 (2 HSPs)
chr3 (8-51)||(5553677-5553720)
chr3 (8-48)||(23433222-23433262)
[»] scaffold0146 (3 HSPs)
scaffold0146 (8-51)||(6820-6863)
scaffold0146 (8-49)||(9715-9756)
scaffold0146 (8-49)||(17382-17423)
[»] chr8 (1 HSPs)
chr8 (8-51)||(20731079-20731122)
[»] chr4 (7 HSPs)
chr4 (8-51)||(20264941-20264984)
chr4 (8-52)||(9167390-9167434)
chr4 (8-51)||(17266600-17266643)
chr4 (8-51)||(34098924-34098967)
chr4 (12-51)||(15017546-15017585)
chr4 (12-51)||(39488053-39488092)
chr4 (57-116)||(41021770-41021830)
[»] scaffold0585 (1 HSPs)
scaffold0585 (8-51)||(776-819)
[»] scaffold0096 (1 HSPs)
scaffold0096 (8-51)||(22519-22562)
[»] scaffold0076 (1 HSPs)
scaffold0076 (8-51)||(54976-55019)
[»] scaffold0017 (1 HSPs)
scaffold0017 (8-51)||(4497-4540)
[»] chr6 (3 HSPs)
chr6 (8-51)||(18553543-18553586)
chr6 (8-51)||(20417455-20417498)
chr6 (51-111)||(34940912-34940973)
[»] chr1 (4 HSPs)
chr1 (8-51)||(20190330-20190373)
chr1 (8-51)||(22062047-22062090)
chr1 (8-51)||(6473979-6474022)
chr1 (12-51)||(20127279-20127318)
[»] chr2 (2 HSPs)
chr2 (8-48)||(15410003-15410043)
chr2 (12-47)||(23732354-23732389)
[»] scaffold0010 (1 HSPs)
scaffold0010 (8-51)||(136961-137004)
[»] chr5 (1 HSPs)
chr5 (12-51)||(244345-244384)
[»] scaffold0083 (1 HSPs)
scaffold0083 (13-51)||(33427-33465)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 52 - 447
Target Start/End: Complemental strand, 3704264 - 3703867
Alignment:
Q  52 gttgtgatcttatgttttacaattttgctata-tctttcgatctgatgcaatatttcgattttgactacattcattagcatatttatggttatgatttgg 150  Q
    ||||||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||      
T  3704264 gttgtgatcttatgttttacaatcttgctatcctctttcaatctgatgcaatatttcgattttgactaccttgattagcatatttatggttatgatttaa 3704165  T
Q  151 ctattaagtttctaaagctttggtgtttgttaagtacttaacatcaaaggattttgttttg---tattatatgcaatgatgccta-ataaaggcatgtat 246  Q
    |||||| |||||| |||||| ||||||||| || ||||||||||| ||||||||||||| |   ||||||||| ||||||||||| |||||||||||||     
T  3704164 ctattatgtttctcaagcttcggtgtttgtgaattacttaacatctaaggattttgtttcgtcttattatatgtaatgatgcctatataaaggcatgtag 3704065  T
Q  247 cagacattagaaattgggtaaagggtgggtttattttagcttaaaaaagattttgggctnnnnnnnntacagggataannnnnnnnagagattttgcaac 346  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||        |||| |||| |        ||||||||||||||    
T  3704064 cagacattagaaattgggt-aagggtgcgtttattttagcttaaaaaagattttgggct-aaaaaaatacatggat-acttttttaagagattttgcaac 3703968  T
Q  347 tagaacctatagaaattttgaagtggacttatatattgactatgagttttttaacaaataacttgtaaaagttaaactcaaacttgaacattctacttat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  3703967 tagaacttatagaaattttgaagtggacttatatattgactatgagttttttaacaaataacttgtaaaagttaaattcaaactaggacattctacttat 3703868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 52 - 283
Target Start/End: Complemental strand, 3696729 - 3696490
Alignment:
Q  52 gttgtgatcttatgttttacaattttgctata-tctttcgatctgatgcaatatttcgattttgactacattcattagcatatttatggttatgatttgg 150  Q
    |||||||||||||||||||| || |||||||  ||||||||||| || |||||| || ||| ||||||| || |||||| ||||||| ||||||||||||    
T  3696729 gttgtgatcttatgttttacgatcttgctatcctctttcgatctaattcaatatctctattctgactaccttgattagcctatttatagttatgatttgg 3696630  T
Q  151 ctattaagtttctaaagctttggtgtttgttaagtacttaacatcaaaggattttgttt---tgtattatatgcaatgatgccta-ataaaggc----at 242  Q
    |||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||     ||||||||| ||||||||||| ||||||||    ||    
T  3696629 ctattaagtttctaaagctttggtgtttgtgaattacttaacatctaa-gattttgtttcaccttattatatgtaatgatgcctatataaaggcacatat 3696531  T
Q  243 gtatcagacattagaaattgggtaaagggtgggtttatttt 283  Q
      ||||||||||| |||||||||||| ||||||||| ||||    
T  3696530 caatcagacattaaaaattgggtaaatggtgggtttttttt 3696490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 3695413 - 3695351
Alignment:
Q  339 tttgcaactagaacctatagaaattttgaagtggacttatatattgactatgagttttttaac 401  Q
    |||||||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||    
T  3695413 tttgcaactagaacttatagatattttgaaatggacttatatattaactatgagttttttaac 3695351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 32706545 - 32706589
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatcag 52  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  32706545 acattattcttaatttgcttccgacggctccgtggcactcatcag 32706589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 546
Target Start/End: Complemental strand, 3675933 - 3675876
Alignment:
Q  493 ttcattctgctatctgttgtagcat----gctttttggcataaagcttatatgaaaat 546  Q
    |||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||    
T  3675933 ttcactctgctatctgttgtagcatacatgctttttggcataaagcttatatcaaaat 3675876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 9595379 - 9595340
Alignment:
Q  12 tattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  9595379 tattcataatttgcttccgacggctccgtggcactcatca 9595340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 9646342 - 9646303
Alignment:
Q  12 tattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  9646342 tattcataatttgcttccgacggctccgtggcactcatca 9646303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 446
Target Start/End: Complemental strand, 3676009 - 3675975
Alignment:
Q  412 taaaagttaaactcaaacttgaacattctacttat 446  Q
    ||||||||||||||||||||| |||||||||||||    
T  3676009 taaaagttaaactcaaacttggacattctacttat 3675975  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 3650577 - 3650517
Alignment:
Q  338 ttttgcaac-tagaacctatagaaattttgaagtggacttatatattgactatgagttttt 397  Q
    ||||||||| ||| || |||| |||| ||||| |||||||||||||||||||| |||||||    
T  3650577 ttttgcaacctaggacttatataaatattgaaatggacttatatattgactattagttttt 3650517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 5553677 - 5553720
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5553677 acattattcttaatttgcttccgacggctccgtgacactcatca 5553720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 23433222 - 23433262
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactca 48  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  23433222 acattattcagaatttgcttccgacggctccgtgacactca 23433262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 6820 - 6863
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  6820 acattcttcttaatttgcttccgacggctccgtgacactcatca 6863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 9715 - 9756
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcat 49  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  9715 acattattcttaatttgcttccgacgactccgtgacactcat 9756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 17382 - 17423
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcat 49  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  17382 acattattcttaatttgcttccgacgactccgtgacactcat 17423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 20731079 - 20731122
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  20731079 acattattcttaatttgcttccgacggctccgtggcactcatca 20731122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 20264984 - 20264941
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  20264984 acattattcataatttgcttccgacggctccgtgacactcatca 20264941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 9167390 - 9167434
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatcag 52  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  9167390 acattattcttaatttacttccgacggcttcgtgacactcatcag 9167434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 17266643 - 17266600
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||| |||||||||||||||||||||||| |||||||||    
T  17266643 acattattcataatttgcttccgacggctccgtggcactcatca 17266600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 34098924 - 34098967
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||| |||||||||||||||||||| |||||||||||||    
T  34098924 acattattcataatttgcttccgacggctcagtgacactcatca 34098967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 15017585 - 15017546
Alignment:
Q  12 tattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  15017585 tattcataatttgcttccgacggctccgtggcactcatca 15017546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 39488092 - 39488053
Alignment:
Q  12 tattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  39488092 tattcataatttgcttccgacggctccgtggcactcatca 39488053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 41021830 - 41021770
Alignment:
Q  57 gatcttatgttttacaattttgctatatc-tttcgatctgatgcaatatttcgattttgac 116  Q
    ||||||||||||||  ||||||||||  | |||||||| |||||||||| |||||||||||    
T  41021830 gatcttatgttttatgattttgctatcccctttcgatccgatgcaatatctcgattttgac 41021770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 819 - 776
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  819 acattattcttaattttcttccgacggctccgtggcactcatca 776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 22562 - 22519
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||||||||||||||||||||||| |||| |||||||||    
T  22562 acattattcttaatttgcttccgacggcttcgtggcactcatca 22519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 54976 - 55019
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  54976 acattattcttaatttgcttccgacggctccgtggcattcatca 55019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 4540 - 4497
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||    
T  4540 acattattcataatttgcttccgacggctccgtgatactcatca 4497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 18553543 - 18553586
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  18553543 acattattcataatttgcttccgacggctccatgacactcatca 18553586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 20417498 - 20417455
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||| |||||||||||||||||||||||| |||||||||    
T  20417498 acattattcataatttgcttccgacggctccgtggcactcatca 20417455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 34940973 - 34940912
Alignment:
Q  51 agttgtgatcttatgttttacaattttgctatatc-tttcgatctgatgcaatatttcgatt 111  Q
    ||||| |||||||||||||||||| |||| ||  | |||||||||||||||| |||||||||    
T  34940973 agttgcgatcttatgttttacaatcttgccatcccctttcgatctgatgcaagatttcgatt 34940912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 20190373 - 20190330
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||    
T  20190373 acattattcataagttgcttccgacggctccgtgacactcatca 20190330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 22062090 - 22062047
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||||||| |||||||||||||||||||| |||||||||||||    
T  22062090 acattattcataatttgcttccgacggctcagtgacactcatca 22062047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 6473979 - 6474022
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    |||||| || |||||||||||||||||||||||| |||||||||    
T  6473979 acattaatcataatttgcttccgacggctccgtggcactcatca 6474022  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 20127279 - 20127318
Alignment:
Q  12 tattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  20127279 tattcataatttgcttccgacggctccgtggcactcatca 20127318  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 15410003 - 15410043
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactca 48  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  15410003 acattattcttaatttgcttccgacggcttcgtggcactca 15410043  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 23732389 - 23732354
Alignment:
Q  12 tattcttaatttgcttccgacggctccgtgacactc 47  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23732389 tattcataatttgcttccgacggctccgtgacactc 23732354  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 136961 - 137004
Alignment:
Q  8 acattattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    |||||||||||||||| |||||||||||| |||| |||||||||    
T  136961 acattattcttaatttccttccgacggcttcgtggcactcatca 137004  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 244384 - 244345
Alignment:
Q  12 tattcttaatttgcttccgacggctccgtgacactcatca 51  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  244384 tattcataatttgcttccgacggctccgtggcactcatca 244345  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 33427 - 33465
Alignment:
Q  13 attcttaatttgcttccgacggctccgtgacactcatca 51  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  33427 attcataatttgtttccgacggctccgtgacactcatca 33465  T

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