View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7339_high_2 (Length: 667)

Name: NF7339_high_2
Description: NF7339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7339_high_2
NF7339_high_2
[»] chr1 (14 HSPs)
chr1 (1-442)||(26273028-26273468)
chr1 (1-86)||(17127430-17127515)
chr1 (2-77)||(48606712-48606787)
chr1 (1-70)||(52753916-52753985)
chr1 (1-77)||(30559104-30559180)
chr1 (1-70)||(14498905-14498973)
chr1 (1-77)||(9637121-9637197)
chr1 (1-77)||(25017386-25017462)
chr1 (1-52)||(35949077-35949128)
chr1 (1-86)||(21973887-21973972)
chr1 (2-77)||(40864819-40864894)
chr1 (556-601)||(26273577-26273622)
chr1 (2-43)||(30054855-30054896)
chr1 (615-644)||(26273634-26273663)
[»] chr2 (12 HSPs)
chr2 (1-438)||(19951930-19952370)
chr2 (157-301)||(33453800-33453944)
chr2 (1-70)||(35649759-35649828)
chr2 (1-86)||(22464661-22464746)
chr2 (1-86)||(34526343-34526428)
chr2 (5-77)||(34317570-34317642)
chr2 (1-86)||(22483540-22483625)
chr2 (386-434)||(42476732-42476780)
chr2 (1-46)||(13308747-13308792)
chr2 (556-601)||(19952484-19952529)
chr2 (1-77)||(12539574-12539649)
chr2 (1-86)||(33453287-33453372)
[»] chr5 (9 HSPs)
chr5 (1-412)||(1280043-1280454)
chr5 (1-70)||(3055489-3055558)
chr5 (1-86)||(26540754-26540839)
chr5 (1-52)||(203875-203926)
chr5 (1-77)||(8785782-8785858)
chr5 (1-77)||(23244669-23244745)
chr5 (1-84)||(22541882-22541962)
chr5 (1-77)||(11852715-11852791)
chr5 (2-40)||(27168903-27168941)
[»] chr3 (13 HSPs)
chr3 (105-438)||(43136147-43136484)
chr3 (176-313)||(37382557-37382694)
chr3 (352-438)||(37382703-37382789)
chr3 (1-86)||(43137118-43137203)
chr3 (1-86)||(31989020-31989105)
chr3 (3-86)||(24908494-24908577)
chr3 (1-86)||(53710389-53710474)
chr3 (1-77)||(15667973-15668049)
chr3 (1-86)||(37381968-37382053)
chr3 (376-429)||(28213349-28213406)
chr3 (1-77)||(51261979-51262055)
chr3 (396-433)||(8175495-8175532)
chr3 (3-52)||(43585842-43585891)
[»] chr4 (10 HSPs)
chr4 (96-312)||(12211625-12211848)
chr4 (1-78)||(12211325-12211402)
chr4 (1-86)||(27364874-27364959)
chr4 (1-86)||(55464759-55464844)
chr4 (1-77)||(31944616-31944692)
chr4 (1-70)||(53693133-53693202)
chr4 (1-86)||(42843698-42843783)
chr4 (1-77)||(4325412-4325488)
chr4 (8-52)||(1147537-1147581)
chr4 (375-438)||(38819276-38819340)
[»] chr8 (16 HSPs)
chr8 (260-438)||(34229008-34229198)
chr8 (96-192)||(34228899-34228995)
chr8 (347-434)||(7661841-7661924)
chr8 (1-87)||(30791557-30791643)
chr8 (1-86)||(21958503-21958588)
chr8 (1-70)||(9256396-9256465)
chr8 (1-70)||(13152493-13152562)
chr8 (1-76)||(27190772-27190847)
chr8 (1-75)||(14446834-14446908)
chr8 (345-435)||(465505-465593)
chr8 (1-55)||(10467786-10467840)
chr8 (1-77)||(28846621-28846694)
chr8 (1-86)||(16532730-16532815)
chr8 (1-77)||(24333714-24333790)
chr8 (345-404)||(43384226-43384283)
chr8 (1-45)||(42446950-42446994)
[»] chr7 (12 HSPs)
chr7 (347-412)||(10223216-10223281)
chr7 (1-86)||(27387405-27387490)
chr7 (3-87)||(45197634-45197717)
chr7 (1-86)||(19399969-19400054)
chr7 (1-86)||(26493813-26493898)
chr7 (1-86)||(38575388-38575473)
chr7 (1-70)||(43728003-43728072)
chr7 (1-69)||(9230409-9230477)
chr7 (350-434)||(36906739-36906820)
chr7 (2-77)||(23179985-23180060)
chr7 (6-67)||(18375416-18375477)
chr7 (1-77)||(8638614-8638690)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-86)||(259909-259994)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-86)||(214260-214345)
[»] scaffold0178 (1 HSPs)
scaffold0178 (4-77)||(17740-17813)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-86)||(15805-15890)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-86)||(134953-135038)
[»] scaffold0295 (2 HSPs)
scaffold0295 (382-438)||(9766-9822)
scaffold0295 (382-434)||(13352-13404)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-86)||(197096-197181)
[»] chr6 (7 HSPs)
chr6 (1-70)||(11970967-11971036)
chr6 (1-86)||(24074403-24074488)
chr6 (347-412)||(1296240-1296305)
chr6 (1-77)||(12180624-12180700)
chr6 (1-56)||(25599173-25599228)
chr6 (1-38)||(3050902-3050939)
chr6 (396-433)||(22258138-22258175)
[»] scaffold0003 (1 HSPs)
scaffold0003 (382-434)||(161472-161524)
[»] scaffold0311 (1 HSPs)
scaffold0311 (345-397)||(367-417)
[»] scaffold0198 (1 HSPs)
scaffold0198 (1-43)||(1430-1472)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-43)||(435450-435491)


Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 26273028 - 26273468
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaatttaactgacagtagaag 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26273028 catcacgtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacacatcgttgattttgttgcgcaatttaactgacagtagaag 26273127  T
Q  101 aaattgaaacgacttcattaaatatagttggaaagaataggttcacgcttgatagttgataccaataatcacacatattatgatgattcacaatttcaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26273128 aaattgaaacgacttcattaaatatagttggaaagaataggttcaggcttgatagttgataccaataatcacacatattatgatgattcacaatttcaca 26273227  T
Q  201 tgtaatctcatataatataacaagttctattaacacatgaaattccacctcacgcaggcaatgtacaaaataacaacaagatgtgcaaaatagaattcta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||    
T  26273228 tgtaatctcatataatataacaagttctattaacacatgaaattccacctcacgcaggc-aggtacaaaataacaaaaagatgtgcaaaatagaattata 26273326  T
Q  301 tgtaaattataatatacacaaggaaggaagagaggagaaattgcataatttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaa 400  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26273327 tgtaaatgataatatacacaaggaaggaagaggggagaaattgcataatttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaa 26273426  T
Q  401 acaaagaaggaatgagaaattggagaatcaattgactttcct 442  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  26273427 ataaagaaggaatgagaaattggagaatcaattgactttcct 26273468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 17127515 - 17127430
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||| || |||||| |||||||||||||||    
T  17127515 catcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaattta 17127430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 48606712 - 48606787
Alignment:
Q  2 atcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  48606712 atcaagttacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 48606787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 52753916 - 52753985
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgat 70  Q
    |||||| |||||||||||||||| | |||||||||||||||||||| ||||||||| ||| |||||||||    
T  52753916 catcaaatgacttgaatatctcccgttcgatgtaacatatcatcaagtcattgaaccacacatcgttgat 52753985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30559104 - 30559180
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||| |||| |||| ||| ||||||||| ||||||    
T  30559104 catcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagtcatagaaccacacatcgttgatcttgttg 30559180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14498973 - 14498905
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgat 70  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||| |||||| || |||||||||||||    
T  14498973 catcaaatgacttgaatatctcccgctcgatgtaagatatcatcaagtcattg-accacaaatcgttgat 14498905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9637197 - 9637121
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||||||||||||||||| || ||||| |||||||||||||||| ||||||||| ||  ||| ||||| ||||||    
T  9637197 catcaagtgacttgaatatcacccgctcggtgtaacatatcatcaagtcattgaaccacgcatcattgatcttgttg 9637121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25017462 - 25017386
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||||||| |||||||||||  ||||| ||||| |||||||||| ||||||||| ||| ||||||||| ||||||    
T  25017462 catcaagtgatttgaatatctctcgctcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 25017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35949077 - 35949128
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcatt 52  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  35949077 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatt 35949128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 21973887 - 21973972
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||||| |||||||||||| ||||  |||||||||||||||||||||| ||| ||  || ||| || ||||||| |||||||    
T  21973887 catcaagtgatttgaatatctcccgctcagtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcacaattta 21973972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 40864819 - 40864894
Alignment:
Q  2 atcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    ||||||||||||||||||| |  | ||| ||||| |||||||||| ||||||||| ||| ||||||||| ||||||    
T  40864819 atcaagtgacttgaatatccctcgttcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 40864894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 601
Target Start/End: Original strand, 26273577 - 26273622
Alignment:
Q  556 acgtgtttctgctgtgcgcgtgtgaaaatttttagaatttgcctaa 601  Q
    ||||||||||||||||||||||||| || ||| |||||||||||||    
T  26273577 acgtgtttctgctgtgcgcgtgtgagaaatttcagaatttgcctaa 26273622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 30054896 - 30054855
Alignment:
Q  2 atcaagtgacttgaatatctcctgctcgatgtaacatatcat 43  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  30054896 atcaagtgacttgaatatctcccgctcggtgtaacatatcat 30054855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 644
Target Start/End: Original strand, 26273634 - 26273663
Alignment:
Q  615 aagttggttaattggctattgggttgggcc 644  Q
    ||||||||||||||||||||||||||||||    
T  26273634 aagttggttaattggctattgggttgggcc 26273663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 19951930 - 19952370
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaatttaactgacagtagaag 100  Q
    ||||||||||||||||||||||  ||||  ||| ||||||| |||| ||||||||| | | |||||| || |||||||||||||||| ||||| ||||||    
T  19951930 catcaagtgacttgaatatctctcgctcagtgtgacatatcgtcaagtcattgaaccatacatcgttaatcttgttgcgcaatttaattgacaatagaag 19952029  T
Q  101 aaa-----ttgaaacgacttcattaaatatagttggaaagaataggttcacgcttgatagttgataccaataatcacacatattatgatgattcacaatt 195  Q
    |||     |||||||| |||| ||||||||||||||||||||||||||||  ||||||| ||||||| | |||||||||||  |||||||||||||||||    
T  19952030 aaaagaaattgaaacggcttcgttaaatatagttggaaagaataggttcagacttgataattgatactagtaatcacacat--tatgatgattcacaatt 19952127  T
Q  196 tcacatgtaatctcatataatataacaagttctattaacacatgaaattccacctcacgcaggcaatgtacaaaataacaacaagatgtgcaaaatagaa 295  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||     
T  19952128 tcacatgtaatcccatataatataacaagttctattaacacatgaaattccacctcatgtaggcaatgtacaaaataacaaaaagatgtgcaaaatagag 19952227  T
Q  296 ttctatgtaaattataatatacacaaggaaggaagagaggagaaattgcataatttacacatccaatttttcaattaacacaattcccaattctaaaacc 395  Q
    | |||| ||||| ||||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19952228 tgctatataaatgataatttacacaaggaaggaaggaaggagaaattgtataatttacacatccaatttttcaattaacacaattctcaattctaaaacc 19952327  T
Q  396 ctaaaacaaagaaggaatgagaaattggagaatcaattgactt 438  Q
    |||||| || |||| ||  ||||||||||||||||||||||||    
T  19952328 ctaaaaaaaggaagaaagaagaaattggagaatcaattgactt 19952370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 157 - 301
Target Start/End: Original strand, 33453800 - 33453944
Alignment:
Q  157 tgataccaataatcacacatattatgatgattcacaatttcacatgtaatctcatataatataacaagttctattaacacatgaaattccacctcacgca 256  Q
    |||||| | |||||| |||||||||||| ||||||||||| ||||| |||| ||||||| ||||||| ||  |||||||| ||||||||||||||| |||    
T  33453800 tgatactagtaatcatacatattatgataattcacaattttacatgaaatcccatataaaataacaaatttgattaacacgtgaaattccacctcatgca 33453899  T
Q  257 ggcaatgtacaaaataacaacaagatgtgcaaaatagaattctat 301  Q
    ||||||| ||||||||||||  |||||||||||||||||| ||||    
T  33453900 ggcaatgcacaaaataacaaatagatgtgcaaaatagaatgctat 33453944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35649759 - 35649828
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgat 70  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||    
T  35649759 catcaaatgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaacaacacatcgttgat 35649828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22464746 - 22464661
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||| ||  || ||| || |||||||||||||||    
T  22464746 catcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaattta 22464661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34526428 - 34526343
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||| ||  || ||| || |||||||||||||||    
T  34526428 catcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaattta 34526343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 34317570 - 34317642
Alignment:
Q  5 aagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||||||||||||||| | |||| |||||||||||||||| ||||||||| ||| ||| ||||| ||||||    
T  34317570 aagtgacttgaatatctcttactcggtgtaacatatcatcaagtcattgaaccacacatcattgatcttgttg 34317642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22483625 - 22483540
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||| ||||| ||| |   || ||| || |||||||||||||||    
T  22483625 catcaagtgatttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccattcattgttaatcttgttgcgcaattta 22483540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 42476780 - 42476732
Alignment:
Q  386 ttctaaaaccctaaaacaaagaaggaatgagaaattggagaatcaattg 434  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  42476780 ttctaaaaccctacaacaaggaaggaatgagaaattgaagaatcaattg 42476732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13308792 - 13308747
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaa 46  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||    
T  13308792 catcaagtgacttgaatatctctcgctcggtgtaacatatcatcaa 13308747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 601
Target Start/End: Original strand, 19952484 - 19952529
Alignment:
Q  556 acgtgtttctgctgtgcgcgtgtgaaaatttttagaatttgcctaa 601  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||    
T  19952484 acgtgtttctgttgtgcgcgtgtgagaaattttagaatttgcctaa 19952529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12539649 - 12539574
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||||||||||||||||||  |||||| | |||||||||||||| ||||||||| ||  || |||||| ||||||    
T  12539649 catcaagtgacttgaatatcttatgctcggt-taacatatcatcaagtcattgaaccacgcattgttgatcttgttg 12539574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 33453287 - 33453372
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgt-aacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||| ||||||||| ||||| ||| ||||||| || || |||||| || ||| ||||||||| |||||||||| ||||    
T  33453287 catcaagtgacttaaatatctcccgctcggtgtaaacatatgatgaagtcattg-accacacatcgttgatcttgttgcgcagttta 33453372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 1280454 - 1280043
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta-act-gacagtaga 98  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| || |||||| || |||||||||||| ||| || | |       
T  1280454 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaaatcattgaaccacacattgttgatcttattgcgcaatttagacttgataatctt 1280355  T
Q  99 agaaattgaaacgacttcattaaatatagttggaaagaataggttcacgcttgatagttgataccaataatcacacatattatgatgattcacaatttca 198  Q
         ||||||   || | ||||||||||||||||||||||| |||| ||||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  1280354 cattgttgaaaaagct-ctttaaatatagttggaaagaatagtttcatgcttgatagttgatac---taatcacacttattatgatgattcacaatttca 1280259  T
Q  199 catgtaatctcatataatataacaagttctatt-aacacatgaaattccacctcacgcaggcaatgtacaaaataacaacaagatgtgcaaaatagaatt 297  Q
    |||| |||| |||||||||||| |||||  ||| ||||||||||||||||||||| |||||| |||| ||||||||||| || ||||||||||||||||     
T  1280258 catgaaatcccatataatataataagtttgatttaacacatgaaattccacctcatgcaggctatgtgcaaaataacaaaaacatgtgcaaaatagaatg 1280159  T
Q  298 ctatgtaaattataa-tatacacaaggaaggaagagaggagaaattgcataatttacacatccaatttttcaattaacacaattcccaattctaaaaccc 396  Q
    |||||||||| |||| | ||||||||||||||||   |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  1280158 ctatgtaaatgataaatttacacaaggaaggaaggagggagaaattgtataatttacacatccaatttttcaattcacaaaattcccaattctaaaaccc 1280059  T
Q  397 taaaacaaagaaggaa 412  Q
    |||||||| |||||||    
T  1280058 taaaacaaggaaggaa 1280043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3055558 - 3055489
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgat 70  Q
    |||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||    
T  3055558 catcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttgat 3055489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 26540754 - 26540839
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||| ||  || ||| || |||||||||||||||    
T  26540754 catcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaattta 26540839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 203926 - 203875
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcatt 52  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  203926 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatt 203875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8785858 - 8785782
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||| ||| |||||||||||| ||| ||||||| |||| ||||| ||||||||| ||| ||||||||| ||||||    
T  8785858 catcaactgaattgaatatctcccgcttgatgtaatatattatcaagtcattgaaccacacatcgttgatcttgttg 8785782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23244669 - 23244745
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||||||||| ||||| || | ||||||  |||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  23244669 catcaagtgactagaataacttccgctcgacataacatatcatcaagtcattgaacgacacatcgttgatcttgttg 23244745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 22541962 - 22541882
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaatt 84  Q
    |||| |||||||||||||||| | | |||||||||||||||||||| |||||   |||| | | |||||| |||||||||||||    
T  22541962 catcgagtgacttgaatatcttccgttcgatgtaacatatcatcaagtcatt---caaccagttgttgatattgttgcgcaatt 22541882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11852791 - 11852715
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||||||| || ||||||||| | ||| |||||||||||||||| ||||||||| ||| ||| || || ||||||    
T  11852791 catcaagtgagttaaatatctcccgttcggtgtaacatatcatcaagtcattgaaccacacatctttcatcttgttg 11852715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 27168903 - 27168941
Alignment:
Q  2 atcaagtgacttgaatatctcctgctcgatgtaacatat 40  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  27168903 atcaagtgacttgaatatctcccgctcggtgtaacatat 27168941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 2e-97; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 105 - 438
Target Start/End: Complemental strand, 43136484 - 43136147
Alignment:
Q  105 tgaaacgacttcattaaatatagttggaaagaataggttcacgcttgatagttgataccaataatcacacatattatgatgattcacaatttcacatgta 204  Q
    ||||||| |||||||||||||||||||||||||||  |||| |||||||| ||||||| | ||||||||| ||||||||||||| ||||||||||||| |    
T  43136484 tgaaacggcttcattaaatatagttggaaagaataaattcaggcttgataattgatactagtaatcacacgtattatgatgattaacaatttcacatgaa 43136385  T
Q  205 atctcatataatataacaagttctattaacacatgaaattccacctcacgcaggcaatgtacaaaataacaacaagatgtgcaaaatagaattctatgta 304  Q
    |||  |||||||||||||||||| |||| |||||||||||| |||||  || || ||||||||||||||||| |||||||||||||||||||  ||||||    
T  43136384 atcctatataatataacaagttcgattagcacatgaaattcgacctcgagccggtaatgtacaaaataacaaaaagatgtgcaaaatagaatgttatgta 43136285  T
Q  305 aattataatatacacaaggaaggaagagaggagaaattgcataatttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaaacaa 404  Q
    |||  |||| ||||||||||||||||  |||||||||||  |||||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||    
T  43136284 aatggtaatttacacaaggaaggaaggaaggagaaattgtctaatttacacatctcatttttcaactaacacaattcccaattctaaaaccctaaatcaa 43136185  T
Q  405 agaaggaatg----agaaattggagaatcaattgactt 438  Q
     ||||||| |    ||||||||||||||||||||||||    
T  43136184 ggaaggaaggaagaagaaattggagaatcaattgactt 43136147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 176 - 313
Target Start/End: Original strand, 37382557 - 37382694
Alignment:
Q  176 tattatgatgattcacaatttcacatgtaatctcatataatataacaagttctattaacacatgaaattccacctcacgcaggcaatgtacaaaataaca 275  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||| |||||| | |||||||||||||||||    
T  37382557 tattatgatgattcccaatttcatatgaaatctcatataatataacaagttcgatcaacacatgaaattccacttcacgccgacaatgtacaaaataaca 37382656  T
Q  276 acaagatgtgcaaaatagaattctatgtaaattataat 313  Q
    | |||||||| ||||||||||  ||||||||| |||||    
T  37382657 aaaagatgtgtaaaatagaatgatatgtaaatgataat 37382694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 352 - 438
Target Start/End: Original strand, 37382703 - 37382789
Alignment:
Q  352 acacatccaatttttcaattaacacaattcccaattctaaaaccctaaaacaaagaaggaatgagaaattggagaatcaattgactt 438  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  37382703 acacatctaatttttcaattaacacaattctcagttctaaaaccctaaaacaaggaaggaaggagaaattcgagaatcaattgactt 37382789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43137203 - 43137118
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| | | ||||||||| |||||||||||||||    
T  43137203 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccatacatcgttgatcttgttgcgcaattta 43137118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 31989105 - 31989020
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||| || |||||| |||||||||||||||    
T  31989105 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaattta 31989020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 24908494 - 24908577
Alignment:
Q  3 tcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||| ||||||||||||||||||| | |||||||||||||||| ||||| ||| ||| || |||||| |||||||||||||||    
T  24908494 tcaagcgacttgaatatctcctgcttggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaattta 24908577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 53710474 - 53710389
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||| ||||| ||| |   || |||||| |||||||||||||||    
T  53710474 catcaagtgacttgaatatctcccgctcggtgtaacagatcatcaagtcattcaaccatccattgttgatcttgttgcgcaattta 53710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 15668049 - 15667973
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||| | ||||||| ||| ||| ||||| ||||||    
T  15668049 catcaagtgacttgaatatctcccgctcggtataacatatcatcaagttattgaaccacacatccttgatcttgttg 15667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 37381968 - 37382053
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||| ||||||||||||||| |||||  ||||| |||||||| | ||||| ||| ||| ||||||||| |||||||| ||||||    
T  37381968 catcaaatgacttgaatatctcatgctcagtgtaatatatcatcgagtcatttaaccacacatcgttgatcttgttgcgaaattta 37382053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 28213406 - 28213349
Alignment:
Q  376 caattcccaattctaaaaccctaaaacaa----agaaggaatgagaaattggagaatc 429  Q
    |||||||||||||||||||||||||||||    ||||||||  |||||||||||||||    
T  28213406 caattcccaattctaaaaccctaaaacaattggagaaggaagaagaaattggagaatc 28213349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 51262055 - 51261979
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    ||||||||||||||||||||| | |||   |||||||||||||||| |||||| || |||  |||||||| ||||||    
T  51262055 catcaagtgacttgaatatcttccgcttagtgtaacatatcatcaattcattgtaccacacttcgttgatcttgttg 51261979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 8175495 - 8175532
Alignment:
Q  396 ctaaaacaaagaaggaatgagaaattggagaatcaatt 433  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  8175495 ctaaaacaaacaaggaaggagaaattggagaatcaatt 8175532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 43585891 - 43585842
Alignment:
Q  3 tcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcatt 52  Q
    |||||| ||||| |||||||| ||||| |||||||||||||||| |||||    
T  43585891 tcaagtaacttggatatctcccgctcggtgtaacatatcatcaagtcatt 43585842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 8e-66; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 96 - 312
Target Start/End: Original strand, 12211625 - 12211848
Alignment:
Q  96 agaagaaattgaaacgacttcattaaatatagttggaaagaataggttcacgcttgatagttgataccaataatcacacatattatgatgattcacaatt 195  Q
    |||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||    
T  12211625 agaagaaattgaaacggct-cattaaatatagttggaaagaaaaggttcatgcttgatagttgatactagtaatcacacatataatgatgattcacaatt 12211723  T
Q  196 tcacatgtaatctcatataatataacaagttctatt--------aacacatgaaattccacctcacgcaggcaatgtacaaaataacaacaagatgtgca 287  Q
    ||||||| |||  |||||||||||||||||||||||        |||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||    
T  12211724 tcacatgaaattccatataatataacaagttctattaacagttgaacacatgaaattccacctcacacagactatgtacaaaataacaaaaagatgtgca 12211823  T
Q  288 aaatagaattctatgtaaattataa 312  Q
    ||||||||| |||||||||| ||||    
T  12211824 aaatagaatgctatgtaaatgataa 12211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12211325 - 12211402
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgc 78  Q
    |||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||| ||| ||||||||| |||||||    
T  12211325 catcaaatgacttgaatatctcctgttcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttgc 12211402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27364959 - 27364874
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||| |  |||||| |||||||||||||||    
T  27364959 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccacacactgttgatcttgttgcgcaattta 27364874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 55464759 - 55464844
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||||| ||||| ||| ||| || |||||| |||||||||||||||    
T  55464759 catcaagtgacttgattttctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaattta 55464844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31944692 - 31944616
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    ||||||||||||||||||||||   |||| |||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  31944692 catcaagtgacttgaatatctcacactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 31944616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 53693133 - 53693202
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgat 70  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||| ||| | |||||||    
T  53693133 catcaagtgccttgattatctcccgctcgatgtaacatatcatcaagtcattgaaccacacaccgttgat 53693202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 42843783 - 42843698
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||||||   ||| || |||||||||||||| ||||| ||| ||| || |||||| ||||||| |||||||    
T  42843783 catcaagtgacttgaatatctctcactcaatataacatatcatcaactcattaaaccacacattgttgatcttgttgcacaattta 42843698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4325488 - 4325412
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||||||  |||| |||||||  |||| |||||||||||||||| ||||||||| ||| ||||||||| ||||||    
T  4325488 catcaagtgggttgattatctcccactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 4325412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 1147581 - 1147537
Alignment:
Q  8 tgacttgaatatctcctgctcgatgtaacatatcatcaaatcatt 52  Q
    |||||||||||||| |  ||||||||||| |||||||||||||||    
T  1147581 tgacttgaatatcttccactcgatgtaacctatcatcaaatcatt 1147537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 438
Target Start/End: Complemental strand, 38819340 - 38819276
Alignment:
Q  375 acaattcccaattctaaaaccctaaaacaaagaaggaatgaga-aattggagaatcaattgactt 438  Q
    ||||||||||||| | ||||||||||| |||||| ||| || | ||||||||||| |||||||||    
T  38819340 acaattcccaattttgaaaccctaaaataaagaaagaaagaaacaattggagaatgaattgactt 38819276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 260 - 438
Target Start/End: Original strand, 34229008 - 34229198
Alignment:
Q  260 aatgtacaaaataacaacaagatgtgcaaaatagaattctatgtaaattataatatacacaagg----aaggaagagaggagaaattgcataatttacac 355  Q
    ||||||||||||||||| ||||||||||||| |||||  ||||||||| ||||| |||||||||    |||||||  || |||||||| ||||||||||     
T  34229008 aatgtacaaaataacaaaaagatgtgcaaaacagaatgttatgtaaatgataatttacacaaggaaggaaggaaggaagcagaaattgtataatttacat 34229107  T
Q  356 atccaatttttcaattaacacaattcccaattctaaaaccctaaaacaaagaag--------gaatgagaaattggagaatcaattgactt 438  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||| ||||        ||| |||||||||||||||||||||||||    
T  34229108 atccaatttttcaagtaaaacaattcccaattctaaaaccctaaaacaaggaaggaagaaatgaacgagaaattggagaatcaattgactt 34229198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 34228899 - 34228995
Alignment:
Q  96 agaagaaattgaaacgacttcattaaatatagttggaaagaataggttcacgcttgatagttgataccaataatcacacatattatgatgattcaca 192  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||| | |||||||||||||| | ||| |||| ||||||||||||||||||    
T  34228899 agaagaaattgaaatggcttcattaaatatagttggaaagaataggttcaggtttgatagttgatactagtaaccacaaatattatgatgattcaca 34228995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 347 - 434
Target Start/End: Original strand, 7661841 - 7661924
Alignment:
Q  347 aatttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaaacaaagaaggaatgagaaattggagaatcaattg 434  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||     || |||||| |||||||| ||||||||||||    
T  7661841 aatttacacatccaatttttcaattaacacaattccaaattctaaaacccta----caataaggaaggagaaattagagaatcaattg 7661924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30791557 - 30791643
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaatttaa 87  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||  ||  ||||| ||||||||||||||||    
T  30791557 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccactcattcttgatcttgttgcgcaatttaa 30791643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 21958588 - 21958503
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||| ||| || |||||| |||||||| ||||||    
T  21958588 catcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgcgtaattta 21958503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9256465 - 9256396
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgat 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||| ||| |||||    
T  9256465 catcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattaaaccacacatcattgat 9256396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13152493 - 13152562
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgat 70  Q
    |||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||| | |||||||    
T  13152493 catcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccacacagcgttgat 13152562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27190847 - 27190772
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgtt 76  Q
    ||||||||||||||||||||||| ||| | || ||||||||||||| ||||||||| ||| ||||||||| |||||    
T  27190847 catcaagtgacttgaatatctcccgctaggtgcaacatatcatcaagtcattgaaccacacatcgttgatcttgtt 27190772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 14446908 - 14446834
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgt 75  Q
    ||||||||||||||||||||||   || | |||||||||||||||| ||||||||| ||||||||||||| ||||    
T  14446908 catcaagtgacttgaatatctctctcttggtgtaacatatcatcaagtcattgaaccacaaatcgttgatcttgt 14446834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 435
Target Start/End: Original strand, 465505 - 465593
Alignment:
Q  345 ataatttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaaacaaagaaggaatgagaaattggagaatcaattga 435  Q
    |||| |||||||||||||||||||||||  ||||||| ||||| |||||||||||| ||| ||| ||| || |||||| | ||||||||||    
T  465505 ataacttacacatccaatttttcaatta--acaattctcaattttaaaaccctaaagcaaggaaagaaggaaaaattgaaaaatcaattga 465593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10467840 - 10467786
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaa 55  Q
    |||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  10467840 catcaaatgacttgattatctcccgctcgatgtaacatatcatcaagtcattgaa 10467786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28846694 - 28846621
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    ||||||||||||||||||||||| |||||||||   | |||||||| ||||||||| ||| ||||||||| ||||||    
T  28846694 catcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttgttg 28846621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 16532730 - 16532815
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||||||   || | | |||||||||||||| ||||||||| ||| ||||||||| |||||| | ||||||    
T  16532730 catcaagtgacttgaatatctctcacttggtataacatatcatcaagtcattgaaccacacatcgttgatcttgttgtgtaattta 16532815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24333790 - 24333714
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    ||||||||||||||||||||||| ||||  ||||||||||||| || ||||||||  | | ||||||||| ||||||    
T  24333790 catcaagtgacttgaatatctcccgctcagtgtaacatatcataaagtcattgaatcatacatcgttgatcttgttg 24333714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 43384283 - 43384226
Alignment:
Q  345 ataatttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaaacaa 404  Q
    ||||||||| ||||||||||| |||||||||  ||||||||||||||||| |||||||||    
T  43384283 ataatttacgcatccaattttccaattaaca--attcccaattctaaaactctaaaacaa 43384226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42446994 - 42446950
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatca 45  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||    
T  42446994 catcaagtgacttgaatatcttccgctcgatgtaacatataatca 42446950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 10223281 - 10223216
Alignment:
Q  347 aatttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaaacaaagaaggaa 412  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10223281 aatttacacatcaaatttttcaattaacacaattcccaattctaaaaccctaaaacaaagaaggaa 10223216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27387405 - 27387490
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||| || |||||| |||||||||||||||    
T  27387405 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaattta 27387490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 45197717 - 45197634
Alignment:
Q  3 tcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaatttaa 87  Q
    |||||||||||||||||||||||||||||| || |||||||||| ||||||||| ||| || |||||| ||||||||||||||||    
T  45197717 tcaagtgacttgaatatctcctgctcgatg-aatatatcatcaagtcattgaaccacacattgttgatcttgttgcgcaatttaa 45197634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19400054 - 19399969
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||| || |||||| |||||||||||||||    
T  19400054 catcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaattta 19399969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 26493813 - 26493898
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||| ||||| ||| ||| || ||| || |||||||||||||||    
T  26493813 catcaagtgacttgaatatctcccgctcggtgtaacgtatcatcaagtcatttaaccacacattgttcatcttgttgcgcaattta 26493898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 38575388 - 38575473
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||| || || ||| ||  || |||||| |||||||||||||||    
T  38575388 catcaagtgactttaatatctcccgctcggtgtaacatatcatcaagtcgttcaaccacccattgttgatattgttgcgcaattta 38575473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43728072 - 43728003
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgat 70  Q
    |||||| |||||||||||||||| | ||||| |||||||||||||| ||||||||| ||| |||||||||    
T  43728072 catcaactgacttgaatatctcccgttcgatataacatatcatcaagtcattgaaccacacatcgttgat 43728003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9230477 - 9230409
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttga 69  Q
    |||||| |||||||| ||||||| |||| ||||||||||||||||| ||||||||| ||| ||||||||    
T  9230477 catcaaatgacttgagtatctcccgctctatgtaacatatcatcaagtcattgaaccacacatcgttga 9230409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 36906739 - 36906820
Alignment:
Q  350 ttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaaacaaagaaggaatgagaaattggagaatcaattg 434  Q
    ||||||||||||| || |||||||||  ||||| ||||||||||||||||| ||| ||||| || | ||||||||||||||||||    
T  36906739 ttacacatccaatgttccaattaaca--attcctaattctaaaaccctaaagcaaggaagg-ataaaaaattggagaatcaattg 36906820  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 23179985 - 23180060
Alignment:
Q  2 atcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||||| ||||||||||||  ||||| |||||||||||||||| | ||||||  ||| ||||||||| ||||||    
T  23179985 atcaagtgccttgaatatctctcgctcggtgtaacatatcatcaagttattgaaacacacatcgttgatcttgttg 23180060  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 18375477 - 18375416
Alignment:
Q  6 agtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgtt 67  Q
    ||||| |||||||||||| |||| |||||| |||||||||| ||||||||| ||| ||||||    
T  18375477 agtgatttgaatatctcccgctccatgtaatatatcatcaagtcattgaaccacacatcgtt 18375416  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8638690 - 8638614
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||| ||||||||||||||| || ||| | |||||||||||||| | ||| ||| |||  |||||||| ||||||    
T  8638690 catcaaatgacttgaatatctcttgttcggtataacatatcatcaagtaattaaaccacacgtcgttgatcttgttg 8638614  T

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Target: scaffold0007 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 259994 - 259909
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||  || |||||| |||||||||||||||    
T  259994 catcaagtgacttgaatatatcccgctcgatgtaacatatcatcaagtcattgaaccactcattgttgatcttgttgcgcaattta 259909  T

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Target: scaffold0015 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 214260 - 214345
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||| ||| || |||||| |||||||| ||||||    
T  214260 catcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgcgtaattta 214345  T

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Target: scaffold0178 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 17813 - 17740
Alignment:
Q  4 caagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    |||||||||| ||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||||| ||||||    
T  17813 caagtgacttaaatatctcccgctcgatgtaacgtatcatcaagtcattgaaccacacatcgttgatcttgttg 17740  T

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Target: scaffold0168 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 15890 - 15805
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||| ||  || ||| || |||||||||||||||    
T  15890 catcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaattta 15805  T

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Target: scaffold0019 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 134953 - 135038
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||| || ||| || ||||||| |||||||    
T  134953 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccacacattgttcatcttgttgcacaattta 135038  T

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Target: scaffold0295 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 9822 - 9766
Alignment:
Q  382 ccaattctaaaaccctaaaacaaagaaggaatgagaaattggagaatcaattgactt 438  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  9822 ccaattataaaaccctaaaacatagaaggaatgagaaattggagaatgaattgactt 9766  T

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Target: scaffold0295; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 13352 - 13404
Alignment:
Q  382 ccaattctaaaaccctaaaacaaagaaggaatgagaaattggagaatcaattg 434  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| |||||    
T  13352 ccaattataaaaccctaaaacatagaaggaatgagaaattggagaatgaattg 13404  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 197181 - 197096
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||| ||||| ||| ||  || ||| || |||||||||||||||    
T  197181 catcaagtgatttgaatatctcccgctcggtgtaacatatcatcaattcatttaaccactcattgttaatcttgttgcgcaattta 197096  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11971036 - 11970967
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgat 70  Q
    ||||||||||||||||||||| | ||||| |||||||||| ||||| ||||||||| ||| |||||||||    
T  11971036 catcaagtgacttgaatatcttccgctcggtgtaacatatgatcaagtcattgaaccacacatcgttgat 11970967  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 24074488 - 24074403
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttgcgcaattta 86  Q
    |||||||| ||||||||||||||  |||| |||||||||||||||| |||||  || ||| || |||||| |||||||||||||||    
T  24074488 catcaagtaacttgaatatctccccctcggtgtaacatatcatcaagtcattttaccacacattgttgatcttgttgcgcaattta 24074403  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 1296305 - 1296240
Alignment:
Q  347 aatttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaaacaaagaaggaa 412  Q
    ||||||| ||||||||||||||||||| ||||||  |||||||||||| | |||||| ||||||||    
T  1296305 aatttacgcatccaatttttcaattaatacaattatcaattctaaaactccaaaacatagaaggaa 1296240  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12180624 - 12180700
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaacaacaaatcgttgattttgttg 77  Q
    ||||||||||||||||| |||||  |||| |||||||||||||||| ||||||||| ||| |  |||||| ||||||    
T  12180624 catcaagtgacttgaatttctcccactcggtgtaacatatcatcaagtcattgaaccacacaatgttgatcttgttg 12180700  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25599228 - 25599173
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcatcaaatcattgaac 56  Q
    ||||||||||||||| |||||||  |||||||||||||| |||||| |||||||||    
T  25599228 catcaagtgacttgattatctcccactcgatgtaacataccatcaagtcattgaac 25599173  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3050939 - 3050902
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacat 38  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  3050939 catcaagtgacttgaatatctcccgctcggtgtaacat 3050902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 22258138 - 22258175
Alignment:
Q  396 ctaaaacaaagaaggaatgagaaattggagaatcaatt 433  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  22258138 ctaaaacaaacaaggaaggagaaattggagaatcaatt 22258175  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 161472 - 161524
Alignment:
Q  382 ccaattctaaaaccctaaaacaaagaaggaatgagaaattggagaatcaattg 434  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||| |||||    
T  161472 ccaattataaaaccctaaaacatagaaggaatgagaaattggagaatgaattg 161524  T

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Target: scaffold0311 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 417 - 367
Alignment:
Q  345 ataatttacacatccaatttttcaattaacacaattcccaattctaaaaccct 397  Q
    |||||||||||||||||||||  ||||||||  ||||||||||||||||||||    
T  417 ataatttacacatccaattttcaaattaaca--attcccaattctaaaaccct 367  T

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Target: scaffold0198 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1472 - 1430
Alignment:
Q  1 catcaagtgacttgaatatctcctgctcgatgtaacatatcat 43  Q
    |||||||||| |||||||||||| ||||| |||||||||||||    
T  1472 catcaagtgatttgaatatctcccgctcggtgtaacatatcat 1430  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 435450 - 435491
Alignment:
Q  2 atcaagtgacttgaatatctcctgctcgatgtaacatatcat 43  Q
    |||||||||||||||||||| | ||||| |||||||||||||    
T  435450 atcaagtgacttgaatatcttccgctcggtgtaacatatcat 435491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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