View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7339_high_4 (Length: 421)
Name: NF7339_high_4
Description: NF7339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7339_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 46 - 415
Target Start/End: Complemental strand, 25533920 - 25533551
Alignment:
| Q |
46 |
cctttatctcttcaatgcctggccattaacaataagctgcaatttgtttctggaaacaataacaaacatgagttattgtagcaccacgtgcagcttcgtc |
145 |
Q |
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| T |
25533920 |
cctttatctcttcaatgcctggccattaacaataagctgcaatttgtttctggaaacaataacaaacatgagttattgtagcaccaggtgcagcttggtc |
25533821 |
T |
|
| Q |
146 |
gtcgtgagatgtagctatatcgagattttggatttgatagttaatgaagagaataagtnnnnnnnctatgacccataaggctaaattgaatatagcagca |
245 |
Q |
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| T |
25533820 |
gtcgtgagatgtagctatatcgagattttggatctgatagttaatgaagagaataagtaaaaaaaatatgacccataaggctaaattgaatatagcagca |
25533721 |
T |
|
| Q |
246 |
atgtttagtgaaaggaatgtcaattatgcaaacgacactaagtctttaatcacttctccattgaaattgttgaagttgaaattggagatgaaattggata |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25533720 |
atgtttagtgaaaggaatgtcaattatgcaaacgacactaagtctttaatcacttctccattgaaattgttgaagttgaaattggagatgaaattggata |
25533621 |
T |
|
| Q |
346 |
tggttcttgttgttttttatttgtgatttgtgatagatatgaaacatttatttttctggatattcttcga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25533620 |
tggttcttgttgttttttatttgtgatttgtgatagatatgaaacatttatttttctggatatttttcga |
25533551 |
T |
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