View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7339_high_5 (Length: 395)
Name: NF7339_high_5
Description: NF7339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7339_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 35 - 272
Target Start/End: Original strand, 223958 - 224195
Alignment:
| Q |
35 |
ttttactattcgtatacagtagttattttatcatggtgtctaatttctattggaaaatttgttggactaagttctctccttctaattaaattttcttcat |
134 |
Q |
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| T |
223958 |
ttttactattcgtatacagtagttattttatcatggtgactaatttctattggaaaatttgttggactaagttctctccttctaattaaattttcttcac |
224057 |
T |
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| Q |
135 |
actcaagagtcggagatcaaacttacaacttgaagtgtccgaatctccaaccgttattgaagcgtgttagttttattcaaacataaatcaaaagaagctc |
234 |
Q |
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| T |
224058 |
actcaagagtcggagatcaaacttacaacttgaagtgtccaaaactccaaccgttattgaagtgtgttagttttattcaaacataaatcaaaagaagctc |
224157 |
T |
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| Q |
235 |
aactattcatatacagtagttattttataacggtaact |
272 |
Q |
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| T |
224158 |
aactattcatatacagtagttattttatcacggtaact |
224195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 224195 - 224271
Alignment:
| Q |
308 |
tttcttcatacacaggagtcggaattcaaacctacaaattgcctacgtgtccaaatctctaaccattattgaatatt |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
224195 |
tttcttcatacacaggagtcggaattcaaacctacaaattgcctacgtgtccaaatctctaaccattattgaatatt |
224271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 377
Target Start/End: Complemental strand, 241221 - 241073
Alignment:
| Q |
224 |
aaaagaagctcaactattcatatacagtagttattttataacggtaactaatttctgttgggaaatttgttggactaattaaattttcttcatacacagg |
323 |
Q |
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| T |
241221 |
aaaagaagctcaactattcatatacattagttataatttt--ggt---tagtttctgttggaaaatttgttgtactaattaaattttcttggtacgcaag |
241127 |
T |
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| Q |
324 |
agtcggaattcaaacctacaaattgcctacgtgtccaaatctctaaccattatt |
377 |
Q |
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| T |
241126 |
agtcagagatcaaacctacaaatagcttaagtgtccaaatctttaaccattatt |
241073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 223962 - 224027
Alignment:
| Q |
236 |
actattcatatacagtagttattttataacggtaactaatttctgttgggaaatttgttggactaa |
301 |
Q |
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||||||| ||||||||||||||||||| | ||| |||||||||| |||| |||||||||||||||| |
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| T |
223962 |
actattcgtatacagtagttattttatcatggtgactaatttctattggaaaatttgttggactaa |
224027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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