View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7339_low_13 (Length: 216)
Name: NF7339_low_13
Description: NF7339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7339_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 7755665 - 7755485
Alignment:
| Q |
15 |
atgaaaataatggaaaatcggttttcgttatattttataagatggaacctagcgatgttaggtatcagaaaaatagttatgaagatgctattaggaaaca |
114 |
Q |
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| T |
7755665 |
atgaaaataatggaaaatcggttttcgttatattt-ata-gatggaacctagcgatgttaggtatcagaaaaatagttatgaagatgctattaggaaaca |
7755568 |
T |
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| Q |
115 |
tgaaaagagatttggaagggaatcggagaaggtgaaagcatggaagttggctttgaatcgagtttgtgctctcagtggattac |
197 |
Q |
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| T |
7755567 |
tgaaaagagatttggaagggaatcggagaaggtgaaagcatggaagttggctttgaatcgagtttgtgctctcagtggattac |
7755485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 7763109 - 7762938
Alignment:
| Q |
27 |
gaaaatcggttttcgttatattttataagatggaacctagcgatgttaggta-tcagaaaaatagttatgaagatgctattaggaaacatgaaaagagat |
125 |
Q |
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| T |
7763109 |
gaaaatcagtatttgttattttttataagatagaaccttcagatgttaggtagtcagaggaatagttatgaaattgcaatgatgaaacatgaaaatagat |
7763010 |
T |
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| Q |
126 |
ttggaagggaatcggagaaggtgaaagcatggaagttggctttgaatcgagtttgtgctctcagtggattac |
197 |
Q |
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| T |
7763009 |
ttggaaaggaatcggagaaggtgaaagcatggaggttggctttgaatcgtgtttgtgctctcagtggattac |
7762938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 7839769 - 7839611
Alignment:
| Q |
35 |
gttttcgttatattttataagatggaacctagcgatgttaggtatcagaaaaatagttatgaagatgctattaggaaacatgaaaagagatttggaaggg |
134 |
Q |
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| T |
7839769 |
gtttttgttatattttataaggtggaagcttctgatgttagacatcagagaaagagctatgaaattgcaatgattcaacatgaaaagagatttggaaagg |
7839670 |
T |
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| Q |
135 |
aatcggagaaggtgaaagcatggaagttggctttgaatcgagtttgtgctctcagtgga |
193 |
Q |
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| T |
7839669 |
aatcggagaaggtgaagaaatggaggtctgctttgaaaagagtttgtgctcttagtgga |
7839611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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