View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7339_low_2 (Length: 870)

Name: NF7339_low_2
Description: NF7339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7339_low_2
NF7339_low_2
[»] chr1 (2 HSPs)
chr1 (1-851)||(32703730-32704581)
chr1 (559-684)||(16809137-16809262)


Alignment Details
Target: chr1 (Bit Score: 783; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 783; E-Value: 0
Query Start/End: Original strand, 1 - 851
Target Start/End: Original strand, 32703730 - 32704581
Alignment:
Q  1 aaatgataaatgaagaatatgttacaagacatttttgtgtgtggaaaattcatattaaaa-tttacacactagtgcaagacaagtgaactcacgttaaag 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32703730 aaatgataaatgaagaatatgttacaagacatttttgtgtgtggaaaattcatattaaaagtttacacactagtgcaagacaagtgaactcacgttaaag 32703829  T
Q  100 aaccagtggtaataaaggaactcaggaatctagttacaaagatgcgtgctccaagttctttccaagaaggtaccatgtgtttagggttggtcttaagggt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32703830 aaccagtggtaataaaggaactcaggaatctagttacaaagatgcgtgctccaagttctttccaagaaggtaccatgtgtttagggttggtcttaagggt 32703929  T
Q  200 acaacactctccaagaattccatgagctgcagtcatgccagcctgaaagttcagtcttacacttcagttgtttgttttgtttcaacaggttggtgacatt 299  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  32703930 acaacagtctccaagaattccatgagctgcagtcatgccagcctgaaagttcagtcttacacatcagttgtttgttttgtttcatcaggttggtgacatt 32704029  T
Q  300 ttgcaagggaactcttactggaattatatttttagtaaaatccaaatttctttttccattatagactaagctttgattacctttaatccatcttcatgaa 399  Q
    ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32704030 ttgcaagggaactcttactagaattatatttttagtaaaatataaatttctttttccattacagactaagctttgattacctttaatccatcttcatgaa 32704129  T
Q  400 atccataacctaaaaagtacaaacatttacttagatcagatcacatgtataatttacctttaaccaaatgtgagatctctccggtttggctccattcgtg 499  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32704130 atccataacctaaaaagcacaaacatttacttagatcagatcacatgtataatttacctttaaccaaatgtgagatctctccggtttggctccattcgtg 32704229  T
Q  500 acccaacaattatgaaaacttttgaattttgatgtaaataaagagaataatcaggaatgtaccttggtatgccccagaaaaccagatttttcttttccct 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32704230 acccaacaattatgaaaacttttgaattttgatgtaaataaagagaataatcaggaatgtaccttggtatgccccagaaaaccagatttttcttttccct 32704329  T
Q  600 tgaatacggtctagctctactgaagctttgtatgcggcaactgatgggaccgggtggccagttgaccacttaagcaatgtattttctggtacatgatctg 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32704330 tgaatacggtctagctctactgaagctttgtatgcggcaactgatgggaccgggtggccagttgaccacttaagcaatgtattttctggtacatgatctg 32704429  T
Q  700 gatttagagttacnnnnnnnggtttacccgcttcttcaatattctgcaaatcaaattagaatcaatagtaatcactcacagtcataaatgaatcacgatg 799  Q
    |||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  32704430 gatttagagttacaaaaaaaggtttacccgcttcttcaatattctgcaaataaaattagaatcaatagtaatcactcacagtcacaaatgaatcacgatg 32704529  T
Q  800 aatgtatttttatagcaatgttaccaacctgaagaatgtttagccagtatgt 851  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32704530 aatgtatttttatagcaatgttaccaacctgaagaatgtttagccagtatgt 32704581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 559 - 684
Target Start/End: Complemental strand, 16809262 - 16809137
Alignment:
Q  559 taccttggtatgccccagaaaaccagatttttcttttcccttgaatacggtctagctctactgaagctttgtatgcggcaactgatgggaccgggtggcc 658  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||| ||| ||| ||   ||| |||||  |||| ||||||| ||||||  | |||||    
T  16809262 taccttggtatacccctgaaaaccatatttttcttttcccttgaatatggtttagttcatgtgatgcttttgatgcagcaactgttgggactagatggcc 16809163  T
Q  659 agttgaccacttaagcaatgtatttt 684  Q
    |||||||||||| | |||||||||||    
T  16809162 agttgaccacttgaacaatgtatttt 16809137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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