View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7339_low_4 (Length: 488)
Name: NF7339_low_4
Description: NF7339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7339_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 484
Target Start/End: Original strand, 3624415 - 3624892
Alignment:
| Q |
7 |
gcaatcaagatatcgcctgatagtagatgacacaataaatctttgttaaattatgatactatcttataatttgaattgagtctgactcactccttacaaa |
106 |
Q |
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| T |
3624415 |
gcaatgaagagatcgtctgatagtagatgacacaataaatctttgttaaattatgatactatcttataatttgaattgagtctgactcacttcttacaaa |
3624514 |
T |
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| Q |
107 |
atcgacatgtgagagaagaattgttctaacttataaactttttgttggaatcaaatgtaagttgatagtctcacgtcgactagaaataaatgaaatgttg |
206 |
Q |
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| T |
3624515 |
accgacatgtgagagaagaattgttttaacttataaactttttattggaatcaaatgtaagttgatagtcccacgtcgactaaaaataaatgaaatgtta |
3624614 |
T |
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| Q |
207 |
gatatataaaatagatgactcgtgtacctaatattttaaagtttttgatggagatatgatgttaaggtctcgtaggggtcttgaacgtaacgtttagttt |
306 |
Q |
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| T |
3624615 |
gatatataaaatagatgactcgtgtacctaatattttaaagtttttgatggagatatgatgttaaggtctcgtaggggtcttgaacgcaacatttagttt |
3624714 |
T |
|
| Q |
307 |
attgaggctaccatgttcccttgaatacttccaacaagtggcaccagagtcttgatgtgtaaagtgtaagtaaagcctctcattgaatggaagagtataa |
406 |
Q |
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| T |
3624715 |
attgtggctaccatgttcccttgaatacttccaacaagtggtaccagagtcttgatgtgtaaagtgtaagtaaagcttctcattgaatgaaagagtataa |
3624814 |
T |
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| Q |
407 |
tttagcaacatataagtaaaaagattcgtagtcacaatgccttaaaattttgggttaagacgtgatgtccatctcatt |
484 |
Q |
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| T |
3624815 |
tttaacaacatataagtgaaaagattcatagacacaatgccttaaaattttgggttaagacgtggtgtccaactcatt |
3624892 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 9586097 - 9586060
Alignment:
| Q |
185 |
actagaaataaatgaaatgttggatatataaaatagat |
222 |
Q |
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| T |
9586097 |
actagaaataaatgaaatcttggatatataagatagat |
9586060 |
T |
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