View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7339_low_5 (Length: 437)
Name: NF7339_low_5
Description: NF7339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7339_low_5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 28607010 - 28606602
Alignment:
| Q |
16 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607010 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
28606911 |
T |
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| Q |
116 |
ttgtcatgatgaagtaacatatctgtgattaacttaaaagaaagtaccagcaaatttaagcccgatggaactaattgttgtttacaaagctaattggcat |
215 |
Q |
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| T |
28606910 |
ttgtcatgatgaagtaacatatctgtgaataacttaaaagaaagtaccagcaaattta-------------taattgttgtttacaaagctaattggcat |
28606824 |
T |
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| Q |
216 |
taacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgttcattgaagta |
315 |
Q |
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| T |
28606823 |
taacgtaacggcaatcctttctaatttcaccttgatctccaataagaggattattctctgataacaattgaacagcccttgagaattgttcattgaagta |
28606724 |
T |
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| Q |
316 |
tccattatcagctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgttgcaagatgttt |
415 |
Q |
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| T |
28606723 |
tccattatcagctgccatttttttcacataaggtgatgttcttggatcagtagctagttcttcatccactgttagaagacccttatgttgcaagatgttt |
28606624 |
T |
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| Q |
416 |
ttgtagtagttgttggcaatta |
437 |
Q |
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| T |
28606623 |
ttgtagtagttgttgtcaatta |
28606602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 205 - 437
Target Start/End: Complemental strand, 28636619 - 28636387
Alignment:
| Q |
205 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
304 |
Q |
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| T |
28636619 |
ctaattggcattaacgtatcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaattgaacagcccttgagaattgt |
28636520 |
T |
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| Q |
305 |
tcattgaagtatccattatcagctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgtt |
404 |
Q |
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| T |
28636519 |
tcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagtggctaattcttcatccacagttagaagacccttatgtt |
28636420 |
T |
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| Q |
405 |
gcaagatgtttttgtagtagttgttggcaatta |
437 |
Q |
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| T |
28636419 |
gcaagatgtttttgtagtagttgttgtcaatta |
28636387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 205 - 437
Target Start/End: Complemental strand, 28664189 - 28663957
Alignment:
| Q |
205 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
304 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28664189 |
ctaattggcattaacgtaacgacaatcctttcgaatttcaccttgatctccggtaagaggattattctccgataacaattgaacagcccttgagaattgt |
28664090 |
T |
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| Q |
305 |
tcattgaagtatccattatcagctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgtt |
404 |
Q |
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| T |
28664089 |
tcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagtagctagttcttcatccactgttagaagacccttatgtt |
28663990 |
T |
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| Q |
405 |
gcaagatgtttttgtagtagttgttggcaatta |
437 |
Q |
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| T |
28663989 |
gcaagatgtttttgtagtagttgttgtcaatta |
28663957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 205 - 437
Target Start/End: Complemental strand, 28657113 - 28656881
Alignment:
| Q |
205 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
304 |
Q |
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|||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28657113 |
ctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaaaagaacagcccttgagaattgg |
28657014 |
T |
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| Q |
305 |
tcattgaagtatccattatcagctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgtt |
404 |
Q |
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| T |
28657013 |
tcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtggctagttcttcatccacagttagaagacccttatgtt |
28656914 |
T |
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| Q |
405 |
gcaagatgtttttgtagtagttgttggcaatta |
437 |
Q |
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| T |
28656913 |
gcaaaatgttcttgtagtagttgttgtcaatta |
28656881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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