View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7339_low_6 (Length: 431)
Name: NF7339_low_6
Description: NF7339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7339_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 140 - 423
Target Start/End: Original strand, 21648488 - 21648771
Alignment:
| Q |
140 |
tatgctaggtgtgagcaaattgatatgaaacaaaagaatgtaaatttgaatttgaaaacttcatgccttattaaaagcacccatgacttttttcacatat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21648488 |
tatgctaggtgtgagcaaattgatatgaaacaaaagaatgtaaatttgaatttgaaaacttcatgccttattaaaagcacccatgacttttttcacatat |
21648587 |
T |
|
| Q |
240 |
attacaaaagtggttagtaaatttaatgtctcgtatttgatctttcaaaattactcttggtttattagtatgtaactttaacttttcaaatttcaaaaga |
339 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21648588 |
attaaaaaagtggttagtaaatttaatgtctcgtatttgatctttcaaaagtactcttggtttattagtatgtaactttaacttctcaaatttcaaaaga |
21648687 |
T |
|
| Q |
340 |
aattagtaatatttataaaatgtatgtttgagaacaaaaataataaataacctagtataaattacatatgaatttatattcttc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21648688 |
aattagtaatatttataaaatgtatgtttgagaacaaaaataataaataacctagtataaattacatatgaatttatattcttc |
21648771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 21648366 - 21648413
Alignment:
| Q |
18 |
gttcctaataaatataattaacctattcaataaactatttgtgcccag |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21648366 |
gttcctaataaatataattaacctattcaataaactatttgtgcccag |
21648413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 32649512 - 32649455
Alignment:
| Q |
316 |
tttaacttttcaaatttcaaaagaaattagtaatatttataaaatgtatgtttgagaa |
373 |
Q |
| |
|
|||||||||||||||||||| | ||||| || |||| |||||| ||||||||||||| |
|
|
| T |
32649512 |
tttaacttttcaaatttcaagatgaattaatagtattaataaaaagtatgtttgagaa |
32649455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University