View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7339_low_9 (Length: 389)
Name: NF7339_low_9
Description: NF7339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7339_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 5329317 - 5328957
Alignment:
| Q |
13 |
aatattgccgattttaaaggaggatcgcaacctggttatgccctgcaattgcaagaggagttgcattggtttgaagtaagtattatttatgattatgtaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329317 |
aatattgccgattttaaaggaggatcgcaacctggttatgccctgcaattgcaagaggagttgcattggtttgaagtaagtattatttatgattatgtaa |
5329218 |
T |
|
| Q |
113 |
aattgagaattgacattttcaactaatttaatgcatgcattccacttacaatttgtagcatcctatgcaatattgcata--ggttaagacaacttaaaat |
210 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5329217 |
aattgagaattgacattttcacctaatttaatgcatgcattccacttactatttgtagcatcctatgcaatattgcatataggttaagacaacttaaaat |
5329118 |
T |
|
| Q |
211 |
ggcaaggtttgattgaaaacaacagttatttattacaaaattatatatatagtataatgtgctcaagttccaagataaacttgctacttttgacttttta |
310 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329117 |
ggcaaggttttattgaaaacaacagttatttattacaaaattatatatatagtataatgtgctcaagttccaagataaacttgctacttttgacttttta |
5329018 |
T |
|
| Q |
311 |
aactatgcaagtttggacatgatagaaaaactcatttttcattggtggtccatgttggcgt |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5329017 |
aactatgcaagtttggacatgatagaaaaactcatttttcattggtggtctatgttggcgt |
5328957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 5316686 - 5316759
Alignment:
| Q |
22 |
gattttaaaggaggatcgcaacctggttatgccctgcaattgcaagaggagttgcattggtttgaagtaagtat |
95 |
Q |
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| T |
5316686 |
gattttaaaggaggatctcaacctggttatgccctgcaactgcaagaggaattgcattggtttgaagtaagtat |
5316759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 348
Target Start/End: Original strand, 45062261 - 45062383
Alignment:
| Q |
226 |
aaaacaacagttatttattacaaaattatatatatagtataatgtgctcaagttccaagataaacttgctacttttgactttttaaactatgcaagtttg |
325 |
Q |
| |
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||||||| | |||||||||| ||| ||| || | || ||||| ||| |||||||||| ||||| || ||| ||| |||| |||| | ||||| |||| |
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| T |
45062261 |
aaaacaaaaattatttattaaaaagttacatgtttaatataaaatgcacaagttccaaaataaagttactattttgaacttcttaatatgtgcaaatttg |
45062360 |
T |
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| Q |
326 |
gacatgatagaaaaactcatttt |
348 |
Q |
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|||||||||||||||||||||| |
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| T |
45062361 |
cacatgatagaaaaactcatttt |
45062383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 351
Target Start/End: Original strand, 425443 - 425608
Alignment:
| Q |
181 |
aatattgcataggttaagacaacttaaaatggcaaggtttgattgaaaacaacagttatttattacaaaattatatatatagtataatgtgctcaagttc |
280 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| || ||| ||| ||| ||||| ||||||| ||||||||||| | | || |||| |||| ||||||| |
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| T |
425443 |
aatattgcataggctaagataacttaaaatggtaaatttttatttaaagcaacaattatttaatacaaaattatgtttttaatatagagtgcacaagttc |
425542 |
T |
|
| Q |
281 |
caagataaacttgctacttttgactttttaaactatgcaagtttggacatgatagaaaaactcatttttca |
351 |
Q |
| |
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||||||||| |||| ||| ||||| ||| |||||||||||| ||||||||||||||| |||| |||| |
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| T |
425543 |
caagataaa----ctac-tttaactttctaacatatgcaagtttgcacatgatagaaaaacccattcttca |
425608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 3530233 - 3530197
Alignment:
| Q |
222 |
attgaaaacaacagttatttattacaaaattatatat |
258 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||| |
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| T |
3530233 |
attgaaaacaacaattatttattaaaaaattatatat |
3530197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 48517593 - 48517479
Alignment:
| Q |
226 |
aaaacaacagttatttattacaaaattatatatatagtataatgtgctcaagttccaagataaacttgctacttttgactttttaaactatgcaagtttg |
325 |
Q |
| |
|
||||||| | |||||||||| |||||||||||| || ||||| || ||||| |||||||| || |||||||| ||||||||| ||| |||||||| |
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|
| T |
48517593 |
aaaacaataattatttattataaaattatatatttaatataaaatgtataagtttgaagataaatttactacttttaactttttaatttattcaagtttg |
48517494 |
T |
|
| Q |
326 |
gacatgatagaaaaa |
340 |
Q |
| |
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|||||||| ||||| |
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| T |
48517493 |
cacatgatacaaaaa |
48517479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 20261468 - 20261423
Alignment:
| Q |
298 |
ttttgactttttaaactatgcaagtttggacatgatagaaaaactc |
343 |
Q |
| |
|
||||||||| ||| |||||||||||| | ||||||||||||||||| |
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|
| T |
20261468 |
ttttgacttcttatactatgcaagttcgcacatgatagaaaaactc |
20261423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 341
Target Start/End: Original strand, 6863605 - 6863734
Alignment:
| Q |
212 |
gcaaggtttgattgaaaacaacagttatttattacaaaattatatatatagtataatgtgctcaagttccaagataaacttgctacttttgactttttaa |
311 |
Q |
| |
|
||||| ||| ||||||| ||||| ||||||| || ||| |||||||| || || || || ||||||||||| ||||| || ||| ||| | ||||||| |
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| T |
6863605 |
gcaagtttttattgaaaccaacaattatttaataaaaagttatatatttaatacaaaatgttcaagttccaatataaagttactattttaaattttttaa |
6863704 |
T |
|
| Q |
312 |
actatgcaagtttggacatgatagaaaaac |
341 |
Q |
| |
|
| ||||| |||| ||||||||||||||| |
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|
| T |
6863705 |
catgtgcaaatttgcacatgatagaaaaac |
6863734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 38972359 - 38972275
Alignment:
| Q |
222 |
attgaaaacaacagttatttattacaaaattatatatatagtataatgtgctcaagttccaagataaacttgctacttttgactt |
306 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||| ||| || |||| |||| |||| | ||||||||||||| || ||||||||| |
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|
| T |
38972359 |
attgaaaacaacaattatttattgcaattttatgtatttaacataaagtgcacaagcttcaagataaacttgttatttttgactt |
38972275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 34671726 - 34671689
Alignment:
| Q |
175 |
ctatgcaatattgcataggttaagacaacttaaaatgg |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
34671726 |
ctatgcaatattacataggttaagacaactaaaaatgg |
34671689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 12132057 - 12132161
Alignment:
| Q |
237 |
tatttattacaaaattatatatatagtataatgtgctcaagttccaagataaacttgctacttttgactttttaaactatgcaagtttggacatgataga |
336 |
Q |
| |
|
||||||||| ||| |||||||| || ||||| || ||||||||||| | |||||| ||||||| | || |||| | |||||||||| | |||||||| |
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|
| T |
12132057 |
tatttattaaaaagttatatatttaatataaaatgttcaagttccaatacaaacttactactttaaatttcttaacatgtgcaagtttgcagatgataga |
12132156 |
T |
|
| Q |
337 |
aaaac |
341 |
Q |
| |
|
||||| |
|
|
| T |
12132157 |
aaaac |
12132161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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