View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_high_21 (Length: 244)
Name: NF7341_high_21
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_high_21 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 39088823 - 39088591
Alignment:
| Q |
1 |
accaaaccatgtgccttctatagttcactcagtttacccacttaacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacg |
100 |
Q |
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||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39088823 |
accaaactatgttccttctatagttcactcatttttcccacttaacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacg |
39088724 |
T |
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| Q |
101 |
gagttagctaatggcatcttcattggtttgactctcaaccacgttgtttgcgacggcaagatgttttggcatttcatcaatacttggtcacaaatctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39088723 |
gagttagctaatggcatcttcattggtttgactctcaaccacgttgtttgtgacggcaagatgttttggcatttcatcaatacttggtcacaaatctcaa |
39088624 |
T |
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| Q |
201 |
aaaacttccagagtataccaaaactcccttcat |
233 |
Q |
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| T |
39088623 |
aaaacttccagagtataccaaaactcccttcat |
39088591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 39092214 - 39092009
Alignment:
| Q |
1 |
accaaaccatgtgccttctatagttcactcagtttacccacttaacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacg |
100 |
Q |
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| T |
39092214 |
accaaactacgttccttccattgttcattcatttttcccactaaacggtgttaaaaaccacgaagccacttcacaaccaatcttagccgtccaagtaacg |
39092115 |
T |
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| Q |
101 |
gagttagctaatggcatcttcattggtttgactctcaaccacgttgtttgcgacggcaagatgttttggcatttcatcaatacttggtcacaaatctcaa |
200 |
Q |
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| T |
39092114 |
gagttagccaacggcatcttcattggtttcactgtcaaccatgttgtttcagacggcaagtcattttggcatttcgtcaatacttggtcacaaatctcca |
39092015 |
T |
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| Q |
201 |
aaaact |
206 |
Q |
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|||||| |
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| T |
39092014 |
aaaact |
39092009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 39083161 - 39082968
Alignment:
| Q |
9 |
atgtgccttctatagttcactcagtttacccacttaacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacggagttagc |
108 |
Q |
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|||| |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| || ||||||||||||| ||| ||||||||||||||| |
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| T |
39083161 |
atgttccttctatagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttaag |
39083062 |
T |
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| Q |
109 |
taatggcatcttcattggtttgactctcaaccacgttgtttgcgacggcaagatgttttggcatttcatcaatacttggtcacaaatctcaaaa |
202 |
Q |
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| T |
39083061 |
taacggtatcttcattgctttcactgtcaaccatgttgttttagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaa |
39082968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 39071672 - 39071517
Alignment:
| Q |
42 |
ttaacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacggagttagctaatggcatcttcattggtttgactctcaacca |
141 |
Q |
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||||||| ||||||||||||||||| || ||| |||||| ||||| ||| ||||||||||||||| ||||||| ||||||||| || || |||||| |
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| T |
39071672 |
ttaacggcgttaaaaactacgaagctacgtcaaaaccaactctagcagtccaagtaacggagttaagtaatggcgtcttcattgaattcacatgcaacca |
39071573 |
T |
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| Q |
142 |
cgttgtttgcgacggcaagatgttttggcatttcatcaatacttggtcacaaatct |
197 |
Q |
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| T |
39071572 |
cattgttgcagacgccaagtcattttggcatttcgtcaattcttggtcccaaatct |
39071517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 5219 - 5140
Alignment:
| Q |
47 |
ggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacggagttagctaatggcatcttcattgg |
126 |
Q |
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| T |
5219 |
ggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaacggagttagttgacggcatcttcattgg |
5140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 34174908 - 34174825
Alignment:
| Q |
44 |
aacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacggagttagctaatggcatcttcattggt |
127 |
Q |
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| T |
34174908 |
aacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt |
34174825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 11969704 - 11969616
Alignment:
| Q |
38 |
ccacttaacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacggagttagctaatggcatcttcattgg |
126 |
Q |
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|||||||||||||||| |||||| |||| || ||| | ||| | || | ||| |||||||| ||||||| | |||||||||||||||| |
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| T |
11969704 |
ccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcattgg |
11969616 |
T |
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