View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_high_3 (Length: 445)
Name: NF7341_high_3
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 41168371 - 41168784
Alignment:
| Q |
15 |
tattaaaaagggactcagggaagacattgtttggtgtctatcgttgagagttgaatgctaaaaaaccttacgaannnnnnnnnnnnattacaccgaatat |
114 |
Q |
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| T |
41168371 |
tattaaaaagggactcagggaagacattgtttggtgtctatcgttgagagttgaatgctaaaaaaccttacaaatttttattttttattacaccgaatat |
41168470 |
T |
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| Q |
115 |
tgatcgtaattgtatttgtcgcctctatatagtacattcagcatattgttttggtaatacttggccattgttgtacatgcagagctcagttttgtaatgt |
214 |
Q |
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| T |
41168471 |
tgatcgtaattgtatttgtcgcctctatatagtacattcagcatattgttttggtaatacttggccattgttgtacatgcagagctcagttttgtaatgt |
41168570 |
T |
|
| Q |
215 |
ttttgttcgattatggatgtcatgtcctttctatttacatctctactacctaaatacttaggaaaattgataattaatggactatatttcaactctgctt |
314 |
Q |
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| T |
41168571 |
ttttgttcgattatggatgtcatgtcctttctatttacatctctactacctaaatacttaggaaaattgataattaatggactatatttcaactctgctt |
41168670 |
T |
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| Q |
315 |
ccttccactcatctcaaatatttgactgttttgtaggtgattgccaagaggttattggaatctaaacaaaatactccacacttatatttatcatcaggtt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41168671 |
ccttccactcatctcaaatatttgactgttttgtaggtgattgccaagaggttattggaatctaaacaaaatacaccacacttatatttatcatcaggtt |
41168770 |
T |
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| Q |
415 |
ttaatccccttatg |
428 |
Q |
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| T |
41168771 |
ttaatccccttatg |
41168784 |
T |
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