View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7341_high_7 (Length: 353)

Name: NF7341_high_7
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7341_high_7
NF7341_high_7
[»] chr5 (10 HSPs)
chr5 (17-338)||(34232789-34233110)
chr5 (187-339)||(34240531-34240680)
chr5 (189-335)||(42128843-42128986)
chr5 (17-141)||(34240759-34240883)
chr5 (237-339)||(42117767-42117869)
chr5 (192-335)||(41713547-41713691)
chr5 (24-141)||(42128654-42128771)
chr5 (201-339)||(42123470-42123605)
chr5 (17-141)||(42117505-42117629)
chr5 (26-138)||(42123262-42123374)
[»] chr6 (3 HSPs)
chr6 (17-137)||(25523231-25523351)
chr6 (17-136)||(24140603-24140722)
chr6 (185-339)||(24140786-24140936)
[»] chr4 (2 HSPs)
chr4 (189-339)||(11118103-11118250)
chr4 (49-137)||(11117948-11118036)
[»] chr2 (6 HSPs)
chr2 (201-339)||(12248432-12248567)
chr2 (201-339)||(11994362-11994497)
chr2 (26-141)||(12248221-12248336)
chr2 (26-141)||(11994593-11994708)
chr2 (50-137)||(32682113-32682200)
chr2 (246-335)||(32681903-32681992)
[»] chr3 (2 HSPs)
chr3 (203-339)||(8523080-8523213)
chr3 (49-141)||(8522908-8523000)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 34233110 - 34232789
Alignment:
17 ctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
34233110 ctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatacttacaaagtttattggaatttttaccaatgtcatattgatcccttt 34233011  T
117 gtttgccacagtcacagaatcataggaccctgctgaatcttgtacatatagcaaactggtattctctcccacttgagtaacagccttcatggcttcatac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34233010 gtttgccacagtcacagaatcataggaccctgctgaatcttgtacatatagcaaactggtattctctcccacttgagtaacagccttcatggcttcatac 34232911  T
217 tttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattcttgatctttaaattgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34232910 tttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattcttgatctttaaattgg 34232811  T
317 caatgtgaccatgcaacttatt 338  Q
    ||||||||||||||||||||||    
34232810 caatgtgaccatgcaacttatt 34232789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 187 - 339
Target Start/End: Complemental strand, 34240680 - 34240531
Alignment:
187 acttgagtaacagccttcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaac 286  Q
    |||||||||||   ||||||||||||| | | ||| |||||| ||||   ||||||||||||| |||||||||| |  ||||||||||||||||||||||    
34240680 acttgagtaactttcttcatggcttcaaaatattttaaataggcttt---tggtagcggaccagtaaagttattgcttgagatatcaaaaataactaaac 34240584  T
287 tgggaaatggattcttgatctttaaattggcaatgtgaccatgcaacttattg 339  Q
    | |||||||||| | ||||||||||||||||||||||||||||||||||||||    
34240583 taggaaatggatgcctgatctttaaattggcaatgtgaccatgcaacttattg 34240531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 189 - 335
Target Start/End: Original strand, 42128843 - 42128986
Alignment:
189 ttgagtaacagccttcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactg 288  Q
    ||||||||||  ||||||||||||| ||||||| |||||| ||||   |||||||||||| ||||||||||| || |||||||||||||||| ||||||     
42128843 ttgagtaacattcttcatggcttcaaactttttaaaataggcttt---tggtagcggaccgctaaagttattgcctgagatatcaaaaataattaaactt 42128939  T
289 ggaaatggattcttgatctttaaattggcaatgtgaccatgcaactt 335  Q
    |||||||||| ||||||||||| ||| ||||||  ||||||||||||    
42128940 ggaaatggatgcttgatctttagattagcaatgataccatgcaactt 42128986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 34240883 - 34240759
Alignment:
17 ctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || ||||||||||   || |||||| ||||| |||||    
34240883 ctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatacttacaaacattgttggaattttcgtcagtgtcattttgatgccttt 34240784  T
117 gtttgccacagtcacagaatcatag 141  Q
      | | |||||||||||||||||||    
34240783 tgtcgtcacagtcacagaatcatag 34240759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 42117767 - 42117869
Alignment:
237 tggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattcttgatctttaaattggcaatgtgaccatgcaactta 336  Q
    |||||||||||  |||||||||||||| ||||||| |||||||| |||||| |||||||||| ||||||||||  ||| | ||||  |||||||||||||    
42117767 tggtagcggacagctaaagttatttcctgagatataaaaaataattaaacttggaaatggatgcttgatctttggattaggaatgataccatgcaactta 42117866  T
337 ttg 339  Q
    |||    
42117867 ttg 42117869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 335
Target Start/End: Complemental strand, 41713691 - 41713547
Alignment:
192 agtaacagccttcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataact----aaact 287  Q
    |||||||  |||||||| || ||| ||||| |||||| ||||   ||||||||||||||| |||| ||| ||||||||||||| ||| | |    |||||    
41713691 agtaacattcttcatggtttgataattttttaaataggcttt---tggtagcggaccactgaagtcattgcccgagatatcaacaattaattaataaact 41713595  T
288 gggaaatggattcttgatctttaaattggcaatgtgaccatgcaactt 335  Q
    |||||||||||  |||||||||||||||| |||  |||||||||||||    
41713594 gggaaatggatgtttgatctttaaattggaaataggaccatgcaactt 41713547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 42128654 - 42128771
Alignment:
24 atcatttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgcc 123  Q
    ||||||||||||  |||| | ||| ||||||||||| ||||||||| |||||||| |  |||||||||| ||||||||| | ||| |||||||  | |||    
42128654 atcatttggaatatctccttcaaatttgtttcttgacaaatcaataattacaaagatatttggaattttcaccaatgtccttttgttcccttttgtcgcc 42128753  T
124 acagtcacagaatcatag 141  Q
    ||| ||| ||||||||||    
42128754 acaatcatagaatcatag 42128771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 42123470 - 42123605
Alignment:
201 cttcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattc 300  Q
    ||||||||||||||| |||||  ||||| ||||   ||||||   ||||| |||||||||||| |||||||||||||| | ||| || |||||| ||  |    
42123470 cttcatggcttcataattttttgaataggcttt---tggtagaaaaccaccaaagttatttccagagatatcaaaaatgattaagcttggaaatagacgc 42123566  T
301 ttgatctttaaattggcaatgtgaccatgcaacttattg 339  Q
    |  |||||||||||||| ||| ||||||| |||||||||    
42123567 tcaatctttaaattggcgatgggaccatgaaacttattg 42123605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 42117505 - 42117629
Alignment:
17 ctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 116  Q
    |||| ||| ||||||||||  |||| | ||| |||||| |||| ||||||||| |||||||  |  |||||||||| ||||||||||| ||| |||||||    
42117505 ctccaatagcatttggaatctctccctcaaatttgttttttgacaaatcaataattacaaaaatgtttggaattttcaccaatgtcattttgctcccttt 42117604  T
117 gtttgccacagtcacagaatcatag 141  Q
      | | |||| ||||||||||||||    
42117605 tgtcgacacaatcacagaatcatag 42117629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 42123262 - 42123374
Alignment:
26 catttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccac 125  Q
    ||||||||||  |||| | ||| ||||||||||| | ||||||| ||||||| ||| |||||||||| || | |||||| ||| | |||||  |||||||    
42123262 catttggaatctctccttcaaatttgtttcttgacatatcaatacttacaaacttttttggaattttaacgagtgtcattttggttccttttgttgccac 42123361  T
126 agtcacagaatca 138  Q
     ||||||||||||    
42123362 ggtcacagaatca 42123374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 25523351 - 25523231
Alignment:
17 ctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 116  Q
    |||| ||| ||||||||||  |||| | ||| ||||||||||| |||||||||| |||||| |||||||||||||| |||||| |||| |  ||||||||    
25523351 ctccaatagcatttggaatctctccttcaaatttgtttcttgaaaaatcaatagatacaaactttattggaattttcaccaatttcatttgaatcccttt 25523252  T
117 gtttgccacagtcacagaatc 137  Q
      |||||||||||||||||||    
25523251 tgttgccacagtcacagaatc 25523231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 24140603 - 24140722
Alignment:
17 ctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatcccttt 116  Q
    |||| ||| ||||||||||  |||| | ||| ||||||||||| | ||| ||| ||||||| ||| |||||||||| |||| |||||| ||| |||||||    
24140603 ctccgatagcatttggaatctctccttcaaatttgtttcttgacatatcgatacttacaaacttttttggaattttcaccagtgtcattttggtcccttt 24140702  T
117 gtttgccacagtcacagaat 136  Q
      ||||||||||||||||||    
24140703 tgttgccacagtcacagaat 24140722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 339
Target Start/End: Original strand, 24140786 - 24140936
Alignment:
185 ccacttgagtaacagccttcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaa 284  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| ||||   ||| ||   |||||| ||||| ||||| |||||||| ||||| | |||    
24140786 ccacttgagtaacatccttcatggcttcataattttttaaataggcttt---tggcagaaaaccactgaagttgtttccagagatatc-aaaatgattaa 24140881  T
285 actgggaaatggattcttgatctttaaattggcaatgtgaccatgcaacttattg 339  Q
     || ||||||  || ||  |||||||||||||  ||||||||||| |||||||||    
24140882 ccttggaaataaatgctacatctttaaattggtgatgtgaccatgtaacttattg 24140936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 339
Target Start/End: Original strand, 11118103 - 11118250
Alignment:
189 ttgagtaacagccttcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactg 288  Q
    ||||||||||  |||||| |||||||| ||||| |||||| ||||   ||||||   |||||||||| | || ||||||||||||||||| | ||| ||     
11118103 ttgagtaacattcttcatagcttcatagttttttaaataggcttt---tggtagaaaaccactaaagctgttgcccgagatatcaaaaatgattaagctt 11118199  T
289 ggaaatggattcttgatctttaaattggcaatgtgaccatgcaacttattg 339  Q
    |||||| ||| || ||||||||||||  ||||| |||||||||||||||||    
11118200 ggaaatagatgctcgatctttaaattttcaatgggaccatgcaacttattg 11118250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 11117948 - 11118036
Alignment:
49 ttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatc 137  Q
    ||||||||||| ||||||||| |||| || |||||||||||||| |||| |||||| ||| |||||||  || ||||||||||||||||    
11117948 ttgtttcttgacaaatcaatacttactaactttattggaattttcaccagtgtcattttgttcccttttatttccacagtcacagaatc 11118036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 12248432 - 12248567
Alignment:
201 cttcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattc 300  Q
    ||||||||||||| ||||||  |||||| | ||   |||||||||||||||||||||||| || |||||||||||||||  |||||| |||||||||| |    
12248432 cttcatggcttcaaacttttcaaaataggcatt---tggtagcggaccactaaagttattgcctgagatatcaaaaatagttaaacttggaaatggatgc 12248528  T
301 ttgatctttaaattggcaatgtgaccatgcaacttattg 339  Q
    ||  | |||| |||  |||||  ||||||||||||||||    
12248529 tttgtatttagattaacaatgataccatgcaacttattg 12248567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 11994497 - 11994362
Alignment:
201 cttcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattc 300  Q
    ||||||||||||| ||||||  |||||| | ||   |||||||||||||||||||||||| ||  ||||||||||||||  |||||| |||||||||| |    
11994497 cttcatggcttcaaacttttcaaaataggcatt---tggtagcggaccactaaagttattgccttagatatcaaaaatagttaaacttggaaatggatgc 11994401  T
301 ttgatctttaaattggcaatgtgaccatgcaacttattg 339  Q
    ||  | |||| |||  |||||  | ||||||||||||||    
11994400 tttgtatttagattaacaatgatatcatgcaacttattg 11994362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 12248221 - 12248336
Alignment:
26 catttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccac 125  Q
    ||||||||||  |||| | ||| ||||||||||| ||||||||| |||| ||| |  |||||||||| ||| ||||||| ||| |||||||   ||||||    
12248221 catttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgtttggaattttaacccatgtcattttgttcccttttgatgccac 12248320  T
126 agtcacagaatcatag 141  Q
    | ||||||||||||||    
12248321 aatcacagaatcatag 12248336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 11994708 - 11994593
Alignment:
26 catttggaattcctccattaaacttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccac 125  Q
    ||||||||||  |||| | ||| ||||||||||| ||||||||| |||| ||| |  |||||||||| ||| ||||||| ||| |||||||    |||||    
11994708 catttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgtttggaattttaacccatgtcattttgttcccttttgacgccac 11994609  T
126 agtcacagaatcatag 141  Q
    | ||||||||||||||    
11994608 aatcacagaatcatag 11994593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 32682200 - 32682113
Alignment:
50 tgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatc 137  Q
    |||||||||| ||||||||| ||||||||||| |||||||||| || | |||||| ||| |||||||  |  ||| ||||||||||||    
32682200 tgtttcttgacaaatcaatacttacaaagtttcttggaattttcactagtgtcattttgctcccttttgtccccatagtcacagaatc 32682113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 335
Target Start/End: Complemental strand, 32681992 - 32681903
Alignment:
246 accactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattcttgatctttaaattggcaatgtgaccatgcaactt 335  Q
    |||||| ||||| ||||| |||||||||||||| | ||| || |||||| |||  | | ||||||||||| ||||| |||||||||||||    
32681992 accactgaagttgtttccagagatatcaaaaatgattaagctaggaaatagatgttcgttctttaaattgacaatgggaccatgcaactt 32681903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 339
Target Start/End: Original strand, 8523080 - 8523213
Alignment:
203 tcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattctt 302  Q
    ||||||||||| ||||||||||||||  |||   |||||| |||||||||||||||||    |||||||||||||||  ||||   |||||||||| |||    
8523080 tcatggcttcaaactttttgaaataggattt---tggtagaggaccactaaagttattgtttgagatatcaaaaatagttaaatctggaaatggatgctt 8523176  T
303 gatctttaaattggcaatgtgaccatgcaacttattg 339  Q
    |||||||  |||  |||||  ||||||||||||||||    
8523177 gatctttggattaacaatgataccatgcaacttattg 8523213  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 8522908 - 8523000
Alignment:
49 ttgtttcttgagaaatcaatagttacaaagtttattggaatttttaccaatgtcatattgatccctttgtttgccacagtcacagaatcatag 141  Q
    ||||||||||| ||||||||| ||||||||||  |||||||||| || | | |||| ||| |||||||  | |||||| ||||||||||||||    
8522908 ttgtttcttgacaaatcaataattacaaagttgtttggaattttcactagtttcattttgttcccttttgtcgccacaatcacagaatcatag 8523000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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