View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_low_1 (Length: 925)
Name: NF7341_low_1
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 64 - 541
Target Start/End: Original strand, 32955629 - 32956094
Alignment:
| Q |
64 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955629 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
32955728 |
T |
|
| Q |
164 |
ctgttctattatcttaggaatattaagcttatgtcgtcatcatcatcaatatcatcgtaacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
263 |
Q |
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||||||||||| | ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955729 |
ctgttctattaacgtaggaatattaagcttatgtcatcatcat---------------aacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
32955813 |
T |
|
| Q |
264 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgaatcatccatgaaacgtagctcattgccatacatttgact |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955814 |
gacttgtgttgagtctccaagaaaggaaattaggaatgccattttctgattctgcatctgaatcatccatgaaacgtagctcattgccatacatttgact |
32955913 |
T |
|
| Q |
364 |
ctgtggttgtgagtaccatgaa---ttgttgttgttgttactgtagaagtttcctgactccattatgccgccgttagtcgcggctgtcgtggcaaccgcg |
460 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
32955914 |
ctgtggttgtgagtaccatgaattgttgttgttgttgttactgtagaagtttcctgactccattatgccaccgttagtcgcagctgtcgtggcaaccgcg |
32956013 |
T |
|
| Q |
461 |
gcgtttgctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaaccattatt |
541 |
Q |
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| T |
32956014 |
gcgttcgctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaaccattatt |
32956094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 607 - 909
Target Start/End: Original strand, 32956160 - 32956467
Alignment:
| Q |
607 |
tagcatgacattgtctcatatctaacaaagtcaaactcttac-----agctgagacctagtaagctataaatgatttttgccgaacatttatagtctact |
701 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32956160 |
tagcatgacattgtctcctatctaacaaagtcaaactcttactcctgagctcagacctagtaagttataaatgatttttgccgaacatttatagtctact |
32956259 |
T |
|
| Q |
702 |
acgaggtcttggctcatatattttgaacatagacacaaaggtggtattggtaatgtatttttaccttagggccacgaggaccattcctccaaaggggtgt |
801 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32956260 |
acgaggtctcggctcatatattttgaacatagacacaaagatggtattggtaatgtatttttaccttagggccacgaggaccattcctccaaaggggtgt |
32956359 |
T |
|
| Q |
802 |
agaagtggagtcacagctagcacatcgacgagcaagaagagaatcattgttagagttactaccaatattgtttgacttggattgagattgagaattatgt |
901 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32956360 |
agaagtggagtcacagctagcacaacgacgagcaagaagagaatcattgttagagttactaccaatattgtttgacttggattgagattgagaattatgt |
32956459 |
T |
|
| Q |
902 |
ttagtgtt |
909 |
Q |
| |
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|||||||| |
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|
| T |
32956460 |
ttagtgtt |
32956467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 759 - 852
Target Start/End: Complemental strand, 7723610 - 7723517
Alignment:
| Q |
759 |
tttttaccttagggccacgaggaccattcctccaaaggggtgtagaagtggagtcacagctagcacatcgacgagcaagaagagaatcattgtt |
852 |
Q |
| |
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|||||||||| ||||| ||||| || ||||||||||| ||||| || |||| ||||||| | ||||||| |||||||||||||||||||||||| |
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| T |
7723610 |
tttttacctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgtt |
7723517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 465 - 524
Target Start/End: Complemental strand, 7723739 - 7723680
Alignment:
| Q |
465 |
ttgctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatt |
524 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||| |||||||||| |||||| |||| |
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| T |
7723739 |
ttgctcttctctcttccttcttgaatctgatcccacatgcattgcataatgactgtaatt |
7723680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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