View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_low_10 (Length: 349)
Name: NF7341_low_10
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 50608939 - 50609269
Alignment:
| Q |
1 |
agtagaggccacatgttgaaagacctggttgttcctctccttcaatattatccacacagaagcaaaccaaataattttcagaaacaaatgagtaactctt |
100 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50608939 |
agtagagccaacatgttgaaagacctggttgttcctctccttcaatattacctacacagaagcaaaccaaataattttcaaaaacaaatgagtaactctt |
50609038 |
T |
|
| Q |
101 |
ggtaacccagccatattgataaattgatgcaaatgatgtctaatatctccaggactaacagaagagatacccaaccaatgccaaacctgataccatatag |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50609039 |
ggtaaccctgccatattgataaattgatgcaaatgatgtctaatatctccaggtctaacagaagagatacccaaccaatgccaaacctgataccatatag |
50609138 |
T |
|
| Q |
201 |
aactaaaaatcacacaatcaagaaacaaatgcttagctgtttctggatgaccgcaccctgatagacatgccacatcagctgatgtaagaacactctaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
50609139 |
aactaaaaatcacacaatcaagaaacaaatgcttagccgtttctggatgaccgcaccctaatagacatgccacatcagctgatgtaagaacactccgacg |
50609238 |
T |
|
| Q |
301 |
catcaagttatctttaattgacaacctatta |
331 |
Q |
| |
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|| ||| |||||||||||||||||||||||| |
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| T |
50609239 |
caccaaattatctttaattgacaacctatta |
50609269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 17737913 - 17738019
Alignment:
| Q |
4 |
agaggccacatgttgaaagacctggttgttcctctccttcaatattatccacacagaagcaaaccaaataattttcagaaacaaatgagtaactcttggt |
103 |
Q |
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||||||||| |||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
17737913 |
agaggccacctgttgaaagacctggttgttcctctccttccgaagaacccacacagaagcaaaccaaataattttcataaacaaatgtgtaactcttggt |
17738012 |
T |
|
| Q |
104 |
aacccag |
110 |
Q |
| |
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||||||| |
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| T |
17738013 |
aacccag |
17738019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 17738016 - 17738130
Alignment:
| Q |
149 |
ccaggactaacagaagagatacccaaccaatgccaaacctgataccatatagaactaaaaatcacacaatcaagaaacaaatgcttagctgtttctggat |
248 |
Q |
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|||||| ||| ||||||||| ||||||||||||||||||| || |||||| |||| ||||||| ||||| ||||| ||||| ||||| ||||| |||| |
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| T |
17738016 |
ccaggattaaaagaagagattcccaaccaatgccaaaccttatgccatattgaaccgaaaatcaaacaattcagaaataaatggttagccgtttcgggat |
17738115 |
T |
|
| Q |
249 |
gaccgcaccctgata |
263 |
Q |
| |
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| T |
17738116 |
gtccgcaacctgata |
17738130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 26307147 - 26307243
Alignment:
| Q |
165 |
agatacccaaccaatgccaaacctgataccatatagaactaaaaatcacacaatcaagaaacaaatgcttagctgtttctggatgaccgcaccctga |
261 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||| ||||||||||||| | |||||| | ||||||||| || |||||||| ||||| | ||||||||| |
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| T |
26307147 |
agatatccaaccactgccaaacctggtaccaaatagaactaaaaaaaatacaatccacaaacaaatgattcgctgtttccggatgtctgcaccctga |
26307243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 9243094 - 9243144
Alignment:
| Q |
28 |
gttgttcctctccttcaatattatccacacagaagcaaaccaaataatttt |
78 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||| ||||||||||||||| |
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|
| T |
9243094 |
gttgttcctctcctttcaaattacccacacagaagtaaaccaaataatttt |
9243144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 55426332 - 55426403
Alignment:
| Q |
28 |
gttgttcctctccttcaatattatccacacagaagcaaaccaaataattttcagaaacaaatgagtaactct |
99 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||||||||||||||||| | ||||| |||||||| ||||| |
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|
| T |
55426332 |
gttgttcctctccttccatatcatccaagcagaagcaaaccaaataattctaagaaataaatgagttactct |
55426403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 5663085 - 5663189
Alignment:
| Q |
133 |
atgatgtctaatatctccaggactaacagaagagatacccaaccaatgccaaacctgataccatatagaactaaaaatcacacaatcaagaaacaaatgc |
232 |
Q |
| |
|
|||||||| |||||| ||||| |||||| ||||||||||||||| | ||||||||| |||| |||||||| ||| ||||| || ||||||||||| |
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| T |
5663085 |
atgatgtcgaatatccccaggtaaaacagaggagatacccaaccaaagtcaaacctgagaccaaatagaacttaaatgaacacactccagaaacaaatga |
5663184 |
T |
|
| Q |
233 |
ttagc |
237 |
Q |
| |
|
||||| |
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| T |
5663185 |
ttagc |
5663189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 22228847 - 22228969
Alignment:
| Q |
32 |
ttcctctccttcaatattatccacacagaagcaaaccaaataattttcagaaacaaatgagtaactcttggtaacccagccatattgataaattgatgca |
131 |
Q |
| |
|
|||||||||||| || || ||| || | |||||||||||||||| | | |||||||||||||| | ||||| ||| ||||| || |||| ||||| |
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| T |
22228847 |
ttcctctccttccatgatacccaaaccgtagcaaaccaaataattcttaaaaacaaatgagtaatgcgtggtagccctgccatgttagtaaactgatggt |
22228946 |
T |
|
| Q |
132 |
aatgatgtctaatatctccagga |
154 |
Q |
| |
|
||||||||| |||||| |||||| |
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| T |
22228947 |
aatgatgtcgaatatccccagga |
22228969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 25721135 - 25721051
Alignment:
| Q |
56 |
acagaagcaaaccaaataattttcagaaacaaatgagtaactcttggtaacccagccatattgataaattgatgcaaatgatgtc |
140 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||| ||||| || || | |||||||| |||||||| ||||||| |||| |
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|
| T |
25721135 |
acagaagcaaaccaaattattttcagaagagaatgagtgactctaggcaatacggccatattagtaaattgaagcaaatgttgtc |
25721051 |
T |
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