View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_low_11 (Length: 345)
Name: NF7341_low_11
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 3036378 - 3036687
Alignment:
| Q |
17 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036378 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
3036477 |
T |
|
| Q |
117 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036478 |
tctaatgatgtgactgcactcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
3036577 |
T |
|
| Q |
217 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3036578 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaa |
3036677 |
T |
|
| Q |
317 |
agattctatt |
326 |
Q |
| |
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|||||||||| |
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| T |
3036678 |
agattctatt |
3036687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 16863125 - 16863423
Alignment:
| Q |
17 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
116 |
Q |
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|||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||| ||||||| ||| | ||| |
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| T |
16863125 |
gacaacacatggtgagaagatggatcaaacacttgttgttgaaaagattctgagatctttaacaagtaaatttaattacgtgctgtgctcaattcatgaa |
16863224 |
T |
|
| Q |
117 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
216 |
Q |
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|| |||||||| ||| || ||| || |||||||||| || || |||||||||||||||| |||||| ||| |||| |||||||||||||||||||| | |
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| T |
16863225 |
tcaaatgatgtaactacactctcaattaatgaacttcatagcagtttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaac |
16863324 |
T |
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| Q |
217 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaaca |
315 |
Q |
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|||||||||||| || ||||| |||||||||||| | |||| |||||||||||||||||||||||||| |||||||| |||||| |||||||| |||| |
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| T |
16863325 |
aagctttgaaggcatctaatggtggaagaggatctgtaggatatggtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaaca |
16863423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 26 - 281
Target Start/End: Original strand, 20528758 - 20529013
Alignment:
| Q |
26 |
tggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgat |
125 |
Q |
| |
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||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
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| T |
20528758 |
tggtgaaaagatggatcaaactctgcttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgat |
20528857 |
T |
|
| Q |
126 |
gtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttga |
225 |
Q |
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||||| || | | ||| ||||| | || ||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| |||||||||||||| |
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| T |
20528858 |
gtgacaacactttccattaatgaattacatagtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttga |
20528957 |
T |
|
| Q |
226 |
aggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttca |
281 |
Q |
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||||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||| |
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| T |
20528958 |
aggtttctaatggtggaagaggatctgtgggatatgggagaggaagagggcgttca |
20529013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 40613245 - 40612968
Alignment:
| Q |
17 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
116 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
40613245 |
gacaacacatggtgagaagatggatcaaacgctggttgttgaaaagattttgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaa |
40613146 |
T |
|
| Q |
117 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
216 |
Q |
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|| || || || ||| || | | || ||||| | |||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| | |
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| T |
40613145 |
tcaaacgacgtcactacactatcaattgatgagttgcagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaac |
40613046 |
T |
|
| Q |
217 |
aagctttgaaggtttcgaatggaggaagaggatctatgggatttggtagaggaagagggcgttcaggtgctagaggaa |
294 |
Q |
| |
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|||||||||||||||| ||||| | |||||| | |||| | ||||||||||||||| ||||||||||||||||||| |
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| T |
40613045 |
aagctttgaaggtttccaatggtgaaagaggtttcgtggggtatggtagaggaagaggacgttcaggtgctagaggaa |
40612968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 20542082 - 20542289
Alignment:
| Q |
22 |
cacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaa |
121 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || |
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| T |
20542082 |
cacatggtgagaagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaa |
20542181 |
T |
|
| Q |
122 |
tgatgtgactgcattcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagct |
221 |
Q |
| |
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||| || ||| | | | || ||||| | |||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||| |
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| T |
20542182 |
tgacgtcactacgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagct |
20542281 |
T |
|
| Q |
222 |
ttgaaggt |
229 |
Q |
| |
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|||||||| |
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| T |
20542282 |
ttgaaggt |
20542289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 23940233 - 23940152
Alignment:
| Q |
49 |
tggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgatgtgact |
131 |
Q |
| |
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|||| |||||||||||| | ||||| ||| |||| |||||||||| ||||||||| || ||||||||||| |||||||||||| |
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| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgact |
23940152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 29945214 - 29945174
Alignment:
| Q |
87 |
ttcaattatgtggtgtgctctattgaagaatctaatgatgt |
127 |
Q |
| |
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||||||||||| |||||||| ||||||||||| |||||||| |
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|
| T |
29945214 |
ttcaattatgttgtgtgctcaattgaagaatcaaatgatgt |
29945174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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