View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7341_low_14 (Length: 300)

Name: NF7341_low_14
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7341_low_14
NF7341_low_14
[»] chr1 (7 HSPs)
chr1 (46-284)||(3551708-3551946)
chr1 (74-284)||(3562867-3563077)
chr1 (78-281)||(3589433-3589636)
chr1 (89-248)||(3574297-3574456)
chr1 (1-48)||(3552008-3552055)
chr1 (15-50)||(3563414-3563449)
chr1 (222-281)||(3574135-3574194)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 46 - 284
Target Start/End: Complemental strand, 3551946 - 3551708
Alignment:
Q  46 tttaatacacaaaattttgtctttctcttatcatatatgcaattgaatcaaaagttccaattccaaagggttgaatgattagtaaaagtatcttcacatt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3551946 tttaatacacaaaattttgtctttctcttatcatatatgcaattgaatcaaaagttccaattccaaagggttgaatgattagtaaaagtatcttcacatt 3551847  T
Q  146 caatttggtccacattatcctcttcaaagggtggagttgagtattgcatattttgcagcccataaaaatcagagccattagcaactccattcatgtcctc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3551846 caatttggtccacattatcctcttcaaagggtggagttgagtattgcatattttgcagcccataaaaatcagagccattagcaactccattcatgtcctc 3551747  T
Q  246 aaacatatcatcaaatgtccaatccatcctcctcaaatc 284  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3551746 aaacatatcatcaaatgtccaatccatcctcctcaaatc 3551708  T

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Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 74 - 284
Target Start/End: Complemental strand, 3563077 - 3562867
Alignment:
Q  74 tatcatatatgcaattgaatcaaaagttccaattccaaagggttgaatgattagtaaaagtatcttcacattcaatttggtccacattatcctcttcaaa 173  Q
    |||||||||||||  |||||||||| ||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  3563077 tatcatatatgcatgtgaatcaaaaattccaattccaaaggattgaatgattagaaaaggtatcttcacattcaatttggtccacattatcctcttcaaa 3562978  T
Q  174 gggtggagttgagtattgcatattttgcagcccataaaaatcagagccattagcaactccattcatgtcctcaaacatatcatcaaatgtccaatccatc 273  Q
      || ||||||| |||||||||||||| ||||||||||||| ||||| ||||||||| | ||||||||| ||||||||||| |||||| |||||||||||    
T  3562977 aagttgagttgaatattgcatattttgtagcccataaaaattagagcaattagcaaccctattcatgtcatcaaacatatcctcaaatctccaatccatc 3562878  T
Q  274 ctcctcaaatc 284  Q
    || ||||||||    
T  3562877 cttctcaaatc 3562867  T

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Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 281
Target Start/End: Complemental strand, 3589636 - 3589433
Alignment:
Q  78 atatatgcaattgaatcaaaagttccaattccaaagggttgaatgattagtaaaagtatcttcacattcaatttggtccacattatcctcttcaaagggt 177  Q
    |||||||||  ||||||||||||||||| ||||||||  |||||||| || ||||||||||||||||||||||||||||||||||||||||||||   ||    
T  3589636 atatatgcatgtgaatcaaaagttccaactccaaaggaatgaatgatcagaaaaagtatcttcacattcaatttggtccacattatcctcttcaacaagt 3589537  T
Q  178 ggagttgagtattgcatattttgcagcccataaaaatcagagccattagcaactccattcatgtcctcaaacatatcatcaaatgtccaatccatcctcc 277  Q
     | |||||||||||||||||||   ||||||| |||| ||||| ||||||||| ||||||| ||| ||||||||||| |||||| |||||||||| ||||    
T  3589536 tgtgttgagtattgcatattttcttgcccatacaaattagagcaattagcaaccccattcaagtcatcaaacatatcctcaaatttccaatccattctcc 3589437  T
Q  278 tcaa 281  Q
    ||||    
T  3589436 tcaa 3589433  T

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Target: chr1; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 3574456 - 3574297
Alignment:
Q  89 tgaatcaaaagttccaattccaaagggttgaatgattagtaaaagtatcttcacattcaatttggtccacattatcctcttcaaagggtggagttgagta 188  Q
    ||||||||||||||||| |||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||  || |||||||| |    
T  3574456 tgaatcaaaagttccaactccaaaggattgaatgattagaaaaggcatcttcacattcaatttggtccacattatcctcttcaaaaagttgagttgagca 3574357  T
Q  189 ttgcatattttgcagcccataaaaatcagagccattagcaactccattcatgtcctcaaa 248  Q
    |||||||||||| |||||||||||||||||| ||||| |||| |||||||| ||||||||    
T  3574356 ttgcatattttgtagcccataaaaatcagagtcattaacaaccccattcatatcctcaaa 3574297  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3552055 - 3552008
Alignment:
Q  1 tataaaatcttttacaccaaaattagtaatagatttagagaaaagttt 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3552055 tataaaatcttttacaccaaaattagtaatagatttagagaaaagttt 3552008  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 3563449 - 3563414
Alignment:
Q  15 caccaaaattagtaatagatttagagaaaagtttaa 50  Q
    |||||||||||||||||||||||||||| |||||||    
T  3563449 caccaaaattagtaatagatttagagaagagtttaa 3563414  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 3574194 - 3574135
Alignment:
Q  222 attagcaactccattcatgtcctcaaacatatcatcaaatgtccaatccatcctcctcaa 281  Q
    ||||||||| |||||||| ||  |||||||||| | |||||||||||||||| |||||||    
T  3574194 attagcaaccccattcatctcaacaaacatatccttaaatgtccaatccatcatcctcaa 3574135  T

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