View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_low_2 (Length: 501)
Name: NF7341_low_2
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 39951623 - 39952112
Alignment:
| Q |
1 |
actgtcctacttctttggtatattggtgtgggaaatgcatatacatataacactgttgactactttgattttattctcttctctatttagaatatcattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39951623 |
actgtcctacttctttggtatattggtgtgggaaatgcatatacatataacactgttgactactttgattttattctcttctgtatttagaatatcattt |
39951722 |
T |
|
| Q |
101 |
actgaagtttat--ttctggcatgtatctgatgtattttcacatgacacaagctcaaatgcatgcacaactgcaaacatttacttcgtaagaagaattca |
198 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39951723 |
actgaagtttatatttctggcatgtatctgatgtattttcacatgacacaagctcaaatgcatgcacaactgcaaacatttacttcgtatgaagaattca |
39951822 |
T |
|
| Q |
199 |
tgtatttttcattatgctgttctaggtatttttgggattacgtagaaaggaaacaacttgaatggtctgtgtcaagtgaatggtctccaaatggatgcta |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39951823 |
tgtatttttcattatgctgttctaggtatttttgggattacgtagaaaggaaacaacttgaatggtctgtgtcaagtgaatggtctccaaatgggtgcta |
39951922 |
T |
|
| Q |
299 |
tttcatgacagcaaccacaacaccgaggcttcaagttgataatgggtatgatccactcattgcctgaaaatattcaatcgtttatctttatccatgggca |
398 |
Q |
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| T |
39951923 |
tttcatgacagcaaccacaacaccgaggcttcaagttgataatgggtatgatctactcattgcctgaaaatattcaatcgtttatctttatccatgggca |
39952022 |
T |
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| Q |
399 |
ctctgattttgttgttaaaatatgtattagatttaaattatgttgagcaaatatctcttgattatgtttgttgatttttctccctgtaac |
488 |
Q |
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| T |
39952023 |
ctctgattttgttgttaaaatatgtattagatttaaattatgttgagcaaatatctcttgattatgtttgttgatttttctccctgtaac |
39952112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 108 - 415
Target Start/End: Complemental strand, 34230932 - 34230589
Alignment:
| Q |
108 |
tttatttctggcatgtatctgatgtattttcacatgacacaagctcaaatgcatgcacaactgcaaacatttacttcgtaagaagaattcatgtattttt |
207 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||| || |||||||||| ||||| |
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| T |
34230932 |
tttatttctggcaagtatctgatgtattttcaaatgacacaagctcagatgcatgcacaattgcaaacatttgcttcgtatgaggaattcatgtgttttt |
34230833 |
T |
|
| Q |
208 |
cattatgctgttctaggtatttttgggattacgtagaaaggaaacaact---------------tgaatggtctgtgtcaagtgaatggtctccaaatgg |
292 |
Q |
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| T |
34230832 |
cattatgttgttctaggta-ttttgggattacgtggaaaggaaacagcttgcatcaaccaaagctgaatggtctgtgtcaagtgaatggtctccagatgg |
34230734 |
T |
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| Q |
293 |
atgctatttcatgacagcaaccacaacaccgaggcttcaagttgataatgggta----------------------tgatccactcattgcctgaaaata |
370 |
Q |
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|||||||||||||||||||| ||| | || ||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
34230733 |
gtgctatttcatgacagcaacaacagctccaaggcttcaagttgataatgggtatgtctttccactggtggggccttgatctactcattgcctgaaaata |
34230634 |
T |
|
| Q |
371 |
ttcaatcgtttatctttatccatgggcactctgattttgttgtta |
415 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
34230633 |
ttcaattgtttatctttatccatgggcactctgattatgttgtta |
34230589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 411 - 488
Target Start/End: Complemental strand, 34230526 - 34230449
Alignment:
| Q |
411 |
tgttaaaatatgtattagatttaaattatgttgagcaaatatctcttgattatgtttgttgatttttctccctgtaac |
488 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| |
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| T |
34230526 |
tgttaaaatatgtattagatttaaattatgttgagtaaatatctcttgattatgtttgttggcttttatccctgtaac |
34230449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 49198431 - 49198344
Alignment:
| Q |
13 |
ctttggtatattggtgtgggaaatgcatatacatataacactgttgactactttgattttattctcttctctatttagaatatcattt |
100 |
Q |
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|||| |||||||| ||||| ||||||||| |||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||| |
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| T |
49198431 |
ctttagtatattgttgtggcaaatgcatacacatataacattgttgactaatttaattttattcccttctctatttagaatatcattt |
49198344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 30339345 - 30339394
Alignment:
| Q |
367 |
aatattcaatcgtttatctttatccatgggcactctgattttgttgttaa |
416 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30339345 |
aatattcaattgtttatctttatccatgggcactctgattttgttgttaa |
30339394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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