View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_low_22 (Length: 250)
Name: NF7341_low_22
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_22 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 3324925 - 3324688
Alignment:
| Q |
13 |
aatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaagan |
112 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3324925 |
aatatgggctatcaatcaccaatgcttcccaatctttcaaaacatagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaagaa |
3324826 |
T |
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| Q |
113 |
nnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatgcttcacggatcttagaaatttcctggagatcgcttttgattgg |
212 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3324825 |
acttttttgatgatctatatgatgtaagttttaccaagttcgaaacaatatcacatgcatcacgaatcttagaaatttcctggagatcgcttttgattgg |
3324726 |
T |
|
| Q |
213 |
attaggaagttgtagcatggccatcaacactcttggca |
250 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
3324725 |
attaggaagttgcagcatggccatcaacactcttggca |
3324688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 3398445 - 3398289
Alignment:
| Q |
13 |
aatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaagan |
112 |
Q |
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||||||| ||||||||||||||||||| || ||||||||| ||| || |||||||| ||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
3398445 |
aatatggactatcaatcaccaatgcttaccgtcctttcaaagcttcgatgtgtttggtttcaatgccagtcagagaatcaacttactcaagaattaagaa |
3398346 |
T |
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| Q |
113 |
nnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatg |
169 |
Q |
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| T |
3398345 |
gatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatg |
3398289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 31176123 - 31176275
Alignment:
| Q |
13 |
aatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaagan |
112 |
Q |
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||||||| |||||||||||| |||||| || ||||||||| ||| || |||||||| ||||||| | ||||||| |||||| ||||||||||||||| |
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| T |
31176123 |
aatatggactatcaatcaccgatgcttaccgtcctttcaaagcttcgatgtgtttgggttcaatgtcactcagagaatcaacttactcaagaattaagaa |
31176222 |
T |
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| Q |
113 |
nnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatca |
165 |
Q |
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|||||||||||||||| | |||||| |||||||||||| |||| |
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| T |
31176223 |
gatttattgatgatctatatgatgtgaattttactgagttggaaacaacatca |
31176275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 3375369 - 3375424
Alignment:
| Q |
49 |
tcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaaga |
104 |
Q |
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||||||| ||||||||||||| ||||||||| |||||||||| ||| |||||||| |
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| T |
3375369 |
tcaaaacatagaagtgtttgggttcaatgccactcagagattcgactaactcaaga |
3375424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 7164573 - 7164485
Alignment:
| Q |
17 |
tgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaa |
105 |
Q |
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|||||| || |||||||||| ||| | ||||||||||||||||| ||||||| | ||||| || ||| | ||||||| ||||||||| |
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| T |
7164573 |
tgggctttctatcaccaatgattcgtagcctttcaaaacttagaactgtttgggtacaatgtcggtcaaaagttcaactaactcaagaa |
7164485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 20812553 - 20812710
Alignment:
| Q |
13 |
aatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaagan |
112 |
Q |
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||||||| ||||||||||| |||||| || ||| ||||| ||| || |||||||| ||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
20812553 |
aatatggaatatcaatcaccgatgcttaccgtcctatcaaagcttcgatgtgtttggtttcaatgccactcagagaatcaacttactcaagaattaagaa |
20812652 |
T |
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| Q |
113 |
nnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatgc |
170 |
Q |
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|||||||||||||||| | |||||| |||||||||||| ||||||||| |
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| T |
20812653 |
gatatattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatgc |
20812710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 20838908 - 20839064
Alignment:
| Q |
13 |
aatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaagan |
112 |
Q |
| |
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||||||| |||||||||||| ||| || || ||| ||||| ||| || |||||||| ||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
20838908 |
aatatggactatcaatcaccgatggttaccgtcctatcaaagcttcgatgtgtttggtttcaatgccactcagagaatcaacttactcaagaattaagaa |
20839007 |
T |
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| Q |
113 |
nnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatg |
169 |
Q |
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|||||||||||||||| | |||||| |||||||||||| |||||||| |
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| T |
20839008 |
gatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatg |
20839064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 12598941 - 12598886
Alignment:
| Q |
49 |
tcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaaga |
104 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
12598941 |
tcaaaacttagaagtgtttgggttcaatgccactcagagattcaaccaactcaaga |
12598886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 32410982 - 32410919
Alignment:
| Q |
45 |
cctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaatta |
108 |
Q |
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||||||| |||| |||| ||||||| | |||||||| ||| |||||||||| |||||||||||| |
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| T |
32410982 |
cctttcacaactcagaactgtttgggtacaatgccgctcaaagattcaactaactcaagaatta |
32410919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 31059733 - 31059636
Alignment:
| Q |
13 |
aatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaaga |
111 |
Q |
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|||||| | |||| |||||||| |||| || |||||||||| ||||| || |||| | ||||||| |||||||||||||| ||||||||||||||| |
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| T |
31059733 |
aatatgaggtatctatcaccaacgcttatcatcctttcaaaatatagaattgcttgggt-caatgccactcagagattcaactaactcaagaattaaga |
31059636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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