View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7341_low_23 (Length: 248)
Name: NF7341_low_23
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 39088822 - 39089048
Alignment:
| Q |
7 |
gtttaaggatgtctgatacggttgtgttttccgctttggcgtggatgaagagagcaccaatgttgttgcaaatgatagaacatgatgtgttgttgtttgt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39088822 |
gtttaaggatgtctgatacggttgtgttttccgctttggcgtggatgaagagagcaccaatgttgttgcaaatgatggaacatgatgtgttgttgtttgt |
39088921 |
T |
|
| Q |
107 |
ggtcacattgtgttgggtgattataagacggcctgttaagggtgggaaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39088922 |
ggtcacattgtgttgggtgattataagacggcctgttaagggtgggaaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttgg |
39089021 |
T |
|
| Q |
207 |
tttggaatggtttggtggaaaagaatg |
233 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
39089022 |
tttggaatggtttggtggaaaagaatg |
39089048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 39092217 - 39092422
Alignment:
| Q |
11 |
aaggatgtctgatacggttgtgttttccgctttggcgtggatgaagagagcaccaatgttgttgcaaatgatagaacatgatgtgtt------gttgttt |
104 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| || |||| |||||||||||| | ||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
39092217 |
aaggatgtttgatacggttgtattttccgcttttgcatggacgaagagagcaccgaggttgttgcaaaggatggaacatgatgtgttgttgttgttgttt |
39092316 |
T |
|
| Q |
105 |
gtggtcacattgtgttgggtgattataagacggcctgttaagggtgggaaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatttggtttt |
204 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39092317 |
gtggtcacgttgtgttgggtgattataagacggcccgttaagggtgggaaataggaaagtgttgtggaaagggtttgtttcaaatggttgatttggtttt |
39092416 |
T |
|
| Q |
205 |
ggtttg |
210 |
Q |
| |
|
|||||| |
|
|
| T |
39092417 |
ggtttg |
39092422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 39083168 - 39083387
Alignment:
| Q |
7 |
gtttaaggatgtctgatacggttgtgttttccgctttggcgtggatgaagagagcaccaatgttgttgcaaatgatagaacatgatg------------- |
93 |
Q |
| |
|
||||||||||||| || || |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
39083168 |
gtttaaggatgtcggaaacacttgtgttttctgcttttgcgtggatgaagagagcaccaaggttgttgcaaatgatggaacatgatgcattgttgttgtt |
39083267 |
T |
|
| Q |
94 |
--tgttgttgtttgtggtcacattgtgttgggtgattataagacggcctgttaagggtgggaaataggaaagtgttgtggaaagtgtttgtttcaaatgg |
191 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39083268 |
gttgttgttgtttgtggtcacgttgtgttgggtgattatgagacggcctgttaagagtgggaaataggaaagtgttgtagaaagtgtttgtttcaaatgg |
39083367 |
T |
|
| Q |
192 |
ttgatttggttttggtttgg |
211 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39083368 |
ttgatttggttttggtttgg |
39083387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 39071748 - 39071935
Alignment:
| Q |
43 |
tggcgtggatgaagagagcaccaatgttgttgcaaatgatagaacatgatgtgttgttgtt---tgtggtcacattgtgttgggtgattataagacggcc |
139 |
Q |
| |
|
|||| |||| ||| || ||||||| |||||||||||| || |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39071748 |
tggcatggacgaatagggcaccaaggttgttgcaaattatggaacatgatgtgttgttgttgtttgtggtcacgttgtgttgggtgattataagacggc- |
39071846 |
T |
|
| Q |
140 |
tgttaagggtgggaaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttggtttggaatggtttggtggaaaaga |
230 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39071847 |
--ttaagggtgggaaataagagagtgttgtagaaagtgtttgtttcaaatggttgatttggttttggtttggaatgggttggtggaaaaga |
39071935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University