View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_low_25 (Length: 241)
Name: NF7341_low_25
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52792061 - 52791836
Alignment:
| Q |
1 |
cgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttccacttccgaagatcacaaggtatgggacgc |
100 |
Q |
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| T |
52792061 |
cgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttccacttccgaagatcacaaggtatgggacgc |
52791962 |
T |
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| Q |
101 |
tgatttcatcaaggaggttaatgtggttatgctattcgaactcatccgggccgcaaactatttaaacgtcaagagccttttgga---tcttacatgtcaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52791961 |
tgatttcatcaaggaggttaatgtggttatgctattcgaactcatccgggccgcaaactatttaaacgtcaagagccttttggatcttcttacatgtcaa |
52791862 |
T |
|
| Q |
198 |
gttgtagcaaacatcatcaagggtaa |
223 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
52791861 |
gttgtagcaaacatgatcaagggtaa |
52791836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 55118764 - 55118803
Alignment:
| Q |
13 |
gcaagatcttgacgaaggttattgagtattgtaagaagca |
52 |
Q |
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| T |
55118764 |
gcaagatcttgacgaaggttattgaatactgtaagaagca |
55118803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 6948254 - 6948197
Alignment:
| Q |
13 |
gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttc |
70 |
Q |
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| T |
6948254 |
gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttc |
6948197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 11160649 - 11160706
Alignment:
| Q |
13 |
gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttc |
70 |
Q |
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| T |
11160649 |
gcaagatcttggctatggttattgagcattgcaagaagcatgttgacgctaccagttc |
11160706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 11932060 - 11932019
Alignment:
| Q |
17 |
gatcttgacgaaggttattgagtattgtaagaagcacgttga |
58 |
Q |
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| T |
11932060 |
gatcttggcgaaggttattgagtattgcaagaagcatgttga |
11932019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 24412645 - 24412708
Alignment:
| Q |
3 |
aacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctacca |
66 |
Q |
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|||| ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
24412645 |
aacgtaaccagcaagatcttgacaaaggttatcgagtattgtaagaagcatgttgaggctacca |
24412708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 24406563 - 24406502
Alignment:
| Q |
3 |
aacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctac |
64 |
Q |
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|||| ||| |||||||||||| | |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
24406563 |
aacgtaaccagcaagatcttggcaaaggttatcgagtattgtaagaagcatgttgaggctac |
24406502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 24817213 - 24817266
Alignment:
| Q |
18 |
atcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttcc |
71 |
Q |
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|||||| |||| |||||||||||||| |||||||| ||||| ||||| |||||| |
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| T |
24817213 |
atcttggcgaaagttattgagtattgcaagaagcatgttgaggctacaagttcc |
24817266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 35390600 - 35390550
Alignment:
| Q |
8 |
aactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttga |
58 |
Q |
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||||||||| |||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
35390600 |
aactagcaacatcttggcgaaggttattgagtattgtaaaaagcatgttga |
35390550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 8991441 - 8991487
Alignment:
| Q |
12 |
agcaagatcttgacgaaggttattgagtattgtaagaagcacgttga |
58 |
Q |
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|||||||||||| ||||||| ||||||||||| |||||||| ||||| |
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| T |
8991441 |
agcaagatcttggcgaaggtgattgagtattgcaagaagcatgttga |
8991487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 36686984 - 36686932
Alignment:
| Q |
8 |
aactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaag |
60 |
Q |
| |
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||||||||| |||||| | ||||||||||| |||||||| ||||| ||||||| |
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| T |
36686984 |
aactagcaacatcttggcaaaggttattgaatattgtaaaaagcatgttgaag |
36686932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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