View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_low_26 (Length: 237)
Name: NF7341_low_26
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 39556467 - 39556552
Alignment:
| Q |
1 |
tcacaaataacattcaccaccaaagtcatggatttgagatatgaataccaagaagtaagttttttctttcacgttcaaaattcttc |
86 |
Q |
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| T |
39556467 |
tcacaaataacattcaccaccaaagtcatggatttgagatatgaataccaagaagtatgttttttctttcacgttcaaaattcttc |
39556552 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 39556621 - 39556690
Alignment:
| Q |
160 |
cagggatattggaagaactcaaggggaatgcgactcttcacatgcaagtggttgcctatttcttcttctc |
229 |
Q |
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| T |
39556621 |
cagggatattggaagaactcaaggggaatgcgactcttcacatgcaagtggttgcctatttcttcttctc |
39556690 |
T |
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