View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7341_low_3 (Length: 467)
Name: NF7341_low_3
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 448
Target Start/End: Complemental strand, 3324709 - 3324257
Alignment:
| Q |
7 |
atggacatcaacactcttggcaagaacatatcacaggttccttcgcattcttctctccttttctgatctttatgagaacatgggtcaattttccatttgc |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3324709 |
atggccatcaacactcttggcaagaacatatcacaggttccttcgcattcctctctccttttctgatctttatgagaacatgggtcaattttccatttgc |
3324610 |
T |
|
| Q |
107 |
atttctttttctttaaagcaaaattttcaatagaagtgaaatgatgtttttcagataattatagcattttctttttcaacattccatatttgttctgcat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||| ||| |||| |||||||||||| |
|
|
| T |
3324609 |
atttctttttctttaaagcaaaattttcaatagaagtgaaatgatgtttttaagataat--taacactttctttttcagcataccatctttgttctgcat |
3324512 |
T |
|
| Q |
207 |
ccatacggacttcttttgtta--nnnnnnnnncttctgaagtttgtatctatcatctttaattttctcataatactctttgcttatatacacatggtcgc |
304 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3324511 |
ccatacggacttcttttgttattttttttcttcttctgatgtttgtatctattatctttaattttctcataatactctttgcttatatacacatggtcac |
3324412 |
T |
|
| Q |
305 |
atgtttttagtttacaaaaccttcaaacaagaaccttggaacatatcatgtatgtcaatataaaagcagtcaaaacatcaataattgataaaagaacaa- |
403 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3324411 |
ttgtttttagtttataaaaccttaaaacaagaaccttggagcatatcatgtacgtcaatataaaagcagtcaaaacatcaataattgataaaagaacaaa |
3324312 |
T |
|
| Q |
404 |
----------aataaagaacagcagaatctaaataataatggatatttggttttt |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3324311 |
aaataaattcaataaagaacagcagaatctaaataataatggatattaggttttt |
3324257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 12598838 - 12598804
Alignment:
| Q |
12 |
catcaacactcttggcaagaacatatcacaggttc |
46 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
12598838 |
catcgacactcttggcaagaacatatcacaggttc |
12598804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University