View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_low_5 (Length: 432)
Name: NF7341_low_5
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 48108063 - 48107676
Alignment:
| Q |
17 |
catcaccacctctttccttttatttatctcaggtttcaatctctccctctct--ataattcagtgctacaattcttttaatatctaacatatatatcttc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48108063 |
catcaccacctctttccttttatttatctcaggtttcaatctctccctctctctataattcagtgctactattcttttaatatctaacatatatatcttc |
48107964 |
T |
|
| Q |
115 |
acaccatatatgcagggctaggcgttcattctttggactacgattattttgctactattgaggtaataatattgacacatcttttaatatgattattaat |
214 |
Q |
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| T |
48107963 |
acaccatatatgcagggctaggcgttcattctttggactatgattattttgctactattgaggtaat------gacacatcttttaatatgattattaat |
48107870 |
T |
|
| Q |
215 |
tcttaaacattatattgcataaactttcttgtgttgtcaatgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaatt |
314 |
Q |
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| T |
48107869 |
tcttaaacatt-----gcataaattttcttgtgttgtcaatgccttggaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaatt |
48107775 |
T |
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| Q |
315 |
ataataaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcatt |
413 |
Q |
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| T |
48107774 |
atagtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcatt |
48107676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 254 - 413
Target Start/End: Complemental strand, 48064166 - 48064007
Alignment:
| Q |
254 |
atgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttgg |
353 |
Q |
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| T |
48064166 |
atgccttgaaataaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttgg |
48064067 |
T |
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| Q |
354 |
acagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcatt |
413 |
Q |
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| ||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |
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| T |
48064066 |
agagtgtttggaaatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcatt |
48064007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 228 - 413
Target Start/End: Complemental strand, 48101445 - 48101260
Alignment:
| Q |
228 |
attgcataaactttcttgtgttgtcaatgccttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccg |
327 |
Q |
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|||||| |||||| ||||||||| |||||||| ||| ||| |||||| ||| ||||||| | || ||||||||||| || || |||| | ||||| | | |
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| T |
48101445 |
attgcacaaacttacttgtgttgccaatgcctataaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccag |
48101346 |
T |
|
| Q |
328 |
gatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcatt |
413 |
Q |
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| T |
48101345 |
gatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaacggaaatagattcatt |
48101260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 258 - 405
Target Start/End: Complemental strand, 48068818 - 48068671
Alignment:
| Q |
258 |
cttgaaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattataataaattccggatttgatcacaacatagagggttggacag |
357 |
Q |
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||||||||||| |||||| | ||||||||| ||||||||||||||||| || |||||| ||||| | ||||||||||||||||| ||| |||||| | |
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| T |
48068818 |
cttgaaataaaccagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacgg |
48068719 |
T |
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| Q |
358 |
tatttggaaatggaacaattgaggaacgtatatcaaatgatggaaata |
405 |
Q |
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| T |
48068718 |
tgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaata |
48068671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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