View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7341_low_6 (Length: 405)
Name: NF7341_low_6
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7341_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 36348358 - 36348734
Alignment:
| Q |
18 |
tgttgttcttttctttccatgaacatatggttgttattattgttgttgaagggtcttaatccaaaccctccattttgaatgatttcttgttccttttgtg |
117 |
Q |
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| T |
36348358 |
tgttgttcttttctttccatgaacacatggttgttattattgttgttgaagtgtcttaatccaaaccctccattttgaatgatctcttgttccttttgtg |
36348457 |
T |
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| Q |
118 |
atcggtcagacgatgttaagcaactactgtccatcgagccgtcgtttggttgaggacaaaatccttgtaactctttcatctctgaaaatgttgaattcag |
217 |
Q |
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| T |
36348458 |
atcggtcagacgatgttaagcaactactgtccatcgagccgtcgtttggttgaggacaaaatccttgtaactctttcatctctgaaaatgttgaattcag |
36348557 |
T |
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| Q |
218 |
acactgtgaggatacttttgacacaagctctgatagttgaacttttgctgcttcaagccctactattcctaaattctgtctaccaagtgtttcttgagct |
317 |
Q |
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| T |
36348558 |
acactgtgaggatacttttgacacaagctctgatagttgaacttttgctgcttcaagccctactattcctaaattctgtctaccaagtgtttcttgagct |
36348657 |
T |
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| Q |
318 |
ttttcaagcactgattgaaggtatttcccttgagcttctatccttagctgcaagtgtctttgtacctggcacaggtt |
394 |
Q |
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| T |
36348658 |
ttttcaagcactgattgaaggtatttcccttgagcttctatccttagctgcaagtgtctttgtacctggcacaggtt |
36348734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 10292293 - 10292394
Alignment:
| Q |
284 |
tcctaaattctgtctaccaagtgtttcttgagctttttcaagcactgattgaaggtatttcccttgagcttctatccttagctgcaagtgtctttgtacc |
383 |
Q |
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| T |
10292293 |
tcctaaattttgtcttcctagtgtttccttagctttttcaagcactgattgaaggtacttcccttgagcctctatccgtagttgtaagtgtcgttgtacc |
10292392 |
T |
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| Q |
384 |
tg |
385 |
Q |
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|| |
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| T |
10292393 |
tg |
10292394 |
T |
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