View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7341_low_8 (Length: 354)

Name: NF7341_low_8
Description: NF7341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7341_low_8
NF7341_low_8
[»] chr1 (1 HSPs)
chr1 (10-343)||(10982401-10982733)
[»] chr3 (1 HSPs)
chr3 (24-343)||(18758932-18759250)
[»] chr6 (1 HSPs)
chr6 (10-333)||(16317774-16318078)
[»] chr5 (3 HSPs)
chr5 (114-208)||(20751676-20751770)
chr5 (8-80)||(20751847-20751919)
chr5 (244-343)||(20751551-20751649)
[»] chr4 (1 HSPs)
chr4 (10-80)||(17389131-17389201)
[»] scaffold0011 (3 HSPs)
scaffold0011 (8-80)||(140693-140765)
scaffold0011 (114-208)||(140519-140616)
scaffold0011 (291-343)||(140425-140477)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 10982733 - 10982401
Alignment:
Q  10 aatagattaacttaaataaaattttaaaactagcttcagttagtgtgttacttgaatgtcatcccaaatgtgacagcaatgttaacaatcggaactaagt 109  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  10982733 aatagattaacttaaataaaattttaaaactagcttcagtttgtgtgttacttgaatgtcatcccaaatgtgacaccaatgttagcaatcggaactaagt 10982634  T
Q  110 gacaaactgtgacaccaacgaaactagcaaaacccttgttcttatgcttgattggttgacctcttgcattccattgaacctataacaaaattgaagtgcn 209  Q
    ||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10982633 gaagaactgtgacaccaacgaaactagcaaaatccttgttcttatgcttgattggttgacctcttgcattccattgaacctataacaaaattgaagtgc- 10982535  T
Q  210 nnnnnnnnngtcagcaatcttactaaagtttcattaatatatattaacattaagagagtttcataaaccaaaattagcaacaaatcatgtccaattccat 309  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10982534 aaaaaaaaagtcagcaatcttactaaagtttcattaatatatattaacattaagagagtttcagaaaccaaaattagcaacaaatcatgtccaattccat 10982435  T
Q  310 ctctaaagtatcactaatatttattaacaccaaa 343  Q
    |||||||||||||||||||||||||||| |||||    
T  10982434 ctctaaagtatcactaatatttattaacgccaaa 10982401  T

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Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 24 - 343
Target Start/End: Original strand, 18758932 - 18759250
Alignment:
Q  24 aataaaattttaaaactagcttcagttagtgtgttacttgaatgtcatcccaaatgtgacagcaatgttaacaatcggaactaagtgacaaactgtgaca 123  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||    
T  18758932 aataaaattttaaaactagcttcagtttgtgtgttacttgaatgtcatcccaaatgtgacaccaatgttagcaatcggaactaagtgaagaactgtgaca 18759031  T
Q  124 ccaacgaaactagcaaaacccttgttcttatgcttgattggttgacctcttgcattccattgaacctataacaaaattgaagtgcnnnnnnnnnngtcag 223  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||    
T  18759032 ccaacgaaactagcaaaatccttgttcttatgcttgattggttgacctcttgcattccattgaacctataacaaaattgaagtgc-aaaaaaaaagtcag 18759130  T
Q  224 caatcttactaaagtttcattaatatatattaacattaagagagtttcataaaccaaaattagcaacaaatcatgtccaattccatctctaaagtatcac 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18759131 caatcttactaaagtttcattaatatatattaacattaagagagtttcagaaaccaaaattagcaacaaatcatgtccaattccatctctaaagtatcac 18759230  T
Q  324 taatatttattaacaccaaa 343  Q
    |||||||||||||| |||||    
T  18759231 taatatttattaacgccaaa 18759250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 16318078 - 16317774
Alignment:
Q  10 aatagattaacttaaataaaattttaaaactagcttcagttagtgtgttacttgaatgtcatcccaaatgtgacagcaatgttaacaatcggaactaagt 109  Q
    |||||||||||||||||||||||||| || |||||| |||||| ||||||||| |||||||| |||||||||||| ||||||                      
T  16318078 aatagattaacttaaataaaattttacaattagcttgagttagcgtgttactttaatgtcatgccaaatgtgacaccaatgtc----------------- 16317996  T
Q  110 gacaaactgtgacaccaacgaaactagcaaaacccttgttcttatgcttgattggttgacctcttgcattccattgaacctataacaaaattgaagtgcn 209  Q
      |||||||||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||     
T  16317995 --caaactgtgaaaccaatgaaactagcaaaacccttgttgttatgcttaattggttgacctctcgcattccattgaacctacaacaaaattgaagtgca 16317898  T
Q  210 nnnnnnnnngtcagcaatcttactaaagtttcattaatatatattaacattaagagagtttcataaaccaaaattagcaacaaatcatgtccaattccat 309  Q
             ||||||| ||||||| |||||||| |||||| |||||||||||| ||||||| | ||||||||||||||||||||| ||||| ||||| ||    
T  16317897 aaaaaagaagtcagcagtcttactgaagtttcactaatatttattaacattaaaagagttttagaaaccaaaattagcaacaaataatgtcaaattcaat 16317798  T
Q  310 ctctaaagtatcactaatatttat 333  Q
    |||||||||||||||| |||||||    
T  16317797 ctctaaagtatcactattatttat 16317774  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 20751770 - 20751676
Alignment:
Q  114 aactgtgacaccaacgaaactagcaaaacccttgttcttatgcttgattggttgacctcttgcattccattgaacctataacaaaattgaagtgc 208  Q
    ||||||||||||||||||||||||||||| |||  | |||||||| | ||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  20751770 aactgtgacaccaacgaaactagcaaaactcttactattatgcttaactggctgacctcttgcattccattgaacctaaaacaaaattaaagtgc 20751676  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 20751919 - 20751847
Alignment:
Q  8 ctaatagattaacttaaataaaattttaaaactagcttcagttagtgtgttacttgaatgtcatcccaaatgt 80  Q
    |||||||||||||||||| ||||||||| |||||| || |||||||||||||||||||| |||||||||||||    
T  20751919 ctaatagattaacttaaagaaaattttacaactagattgagttagtgtgttacttgaatttcatcccaaatgt 20751847  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 20751649 - 20751551
Alignment:
Q  244 taatatatattaacattaagagagtttcataaaccaaaattagcaacaaa-tcatgtccaattccatctctaaagtatcactaatatttattaacaccaa 342  Q
    |||||| |||||||||| | |||||||||||||| |||| |  ||||||| |||||||||||||||||| | |||| || |||||||||||||||| |||    
T  20751649 taatatctattaacattcaaagagtttcataaacaaaaaat--caacaaaatcatgtccaattccatctttgaagtctcgctaatatttattaacatcaa 20751552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 17389201 - 17389131
Alignment:
Q  10 aatagattaacttaaataaaattttaaaactagcttcagttagtgtgttacttgaatgtcatcccaaatgt 80  Q
    |||||||||||||||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||    
T  17389201 aatagattaacttaaataaaattttacaactagattgagttagtgtgttacttgaatttcatcccaaatgt 17389131  T

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Target: scaffold0011 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 140765 - 140693
Alignment:
Q  8 ctaatagattaacttaaataaaattttaaaactagcttcagttagtgtgttacttgaatgtcatcccaaatgt 80  Q
    |||||||||||||||||| ||||||||| |||||| || |||||||||||||||||||| |||||||||||||    
T  140765 ctaatagattaacttaaagaaaattttacaactagattgagttagtgtgttacttgaatttcatcccaaatgt 140693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 140616 - 140519
Alignment:
Q  114 aactgtgacaccaacgaaa---ctagcaaaacccttgttcttatgcttgattggttgacctcttgcattccattgaacctataacaaaattgaagtgc 208  Q
    |||||||||||||||||||   |||||||||| |||  | |||||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  140616 aactgtgacaccaacgaaattactagcaaaactcttactattatgcttaactggctgacctcttgcattccattgaacctaaaacaaaattgaagtgc 140519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 140477 - 140425
Alignment:
Q  291 aaatcatgtccaattccatctctaaagtatcactaatatttattaacaccaaa 343  Q
    ||||||||||||||||||| | | |||| || |||||||||||||||| ||||    
T  140477 aaatcatgtccaattccatttttgaagtctcgctaatatttattaacatcaaa 140425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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