View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7342_low_1 (Length: 567)

Name: NF7342_low_1
Description: NF7342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7342_low_1
NF7342_low_1
[»] chr4 (16 HSPs)
chr4 (331-551)||(23054137-23054357)
chr4 (331-551)||(47518354-47518575)
chr4 (335-551)||(53202268-53202485)
chr4 (354-504)||(6410012-6410164)
chr4 (1-118)||(23054571-23054689)
chr4 (1-108)||(47518762-47518869)
chr4 (11-108)||(53201968-53202065)
chr4 (11-108)||(34227304-34227401)
chr4 (434-511)||(24957548-24957626)
chr4 (331-415)||(34227058-34227142)
chr4 (11-110)||(24957897-24957997)
chr4 (4-74)||(6409723-6409794)
chr4 (331-395)||(12469342-12469406)
chr4 (434-511)||(12485337-12485407)
chr4 (8-74)||(19658059-19658126)
chr4 (8-71)||(54199597-54199661)
[»] chr2 (18 HSPs)
chr2 (331-551)||(17375275-17375496)
chr2 (331-548)||(17281850-17282069)
chr2 (331-542)||(1551510-1551722)
chr2 (336-551)||(1895413-1895629)
chr2 (3-118)||(4869335-4869448)
chr2 (4-118)||(34659960-34660072)
chr2 (4-105)||(3921301-3921402)
chr2 (11-108)||(1895118-1895215)
chr2 (4-81)||(17375014-17375090)
chr2 (331-398)||(34660284-34660351)
chr2 (15-108)||(1551897-1551990)
chr2 (6-108)||(17282268-17282370)
chr2 (446-499)||(3921683-3921736)
chr2 (450-518)||(4869707-4869775)
chr2 (331-430)||(3921590-3921689)
chr2 (331-398)||(4869643-4869710)
chr2 (447-507)||(38531146-38531207)
chr2 (511-548)||(4140576-4140613)
[»] chr5 (23 HSPs)
chr5 (335-548)||(7766911-7767125)
chr5 (331-551)||(18696931-18697154)
chr5 (333-545)||(27169997-27170211)
chr5 (4-118)||(7767328-7767442)
chr5 (1-118)||(27170411-27170528)
chr5 (9-94)||(18696719-18696804)
chr5 (1-118)||(26656435-26656550)
chr5 (1-118)||(26928022-26928137)
chr5 (446-548)||(41355452-41355554)
chr5 (1-118)||(7271514-7271628)
chr5 (451-518)||(7271893-7271960)
chr5 (6-108)||(1157532-1157634)
chr5 (1-118)||(6030629-6030742)
chr5 (1-108)||(41355816-41355923)
chr5 (450-551)||(26656827-26656925)
chr5 (450-551)||(26928414-26928512)
chr5 (450-518)||(6030323-6030391)
chr5 (331-391)||(7271832-7271892)
chr5 (331-398)||(6030388-6030455)
chr5 (354-430)||(41355548-41355624)
chr5 (11-108)||(38958483-38958574)
chr5 (331-396)||(38958230-38958295)
chr5 (11-47)||(6989540-6989576)
[»] chr6 (7 HSPs)
chr6 (331-551)||(21881465-21881686)
chr6 (331-542)||(20740576-20740788)
chr6 (4-118)||(21881124-21881238)
chr6 (4-105)||(34213705-34213806)
chr6 (4-108)||(20740310-20740414)
chr6 (15-96)||(22577492-22577574)
chr6 (335-409)||(30845559-30845633)
[»] chr8 (6 HSPs)
chr8 (333-547)||(10408825-10409040)
chr8 (338-548)||(5994635-5994846)
chr8 (1-112)||(5994314-5994424)
chr8 (331-510)||(6444033-6444214)
chr8 (4-117)||(10408533-10408646)
chr8 (1-74)||(20861008-20861081)
[»] chr1 (14 HSPs)
chr1 (332-548)||(34117971-34118190)
chr1 (331-548)||(34654976-34655171)
chr1 (4-118)||(34654645-34654760)
chr1 (447-551)||(39708925-39709028)
chr1 (1-118)||(615446-615561)
chr1 (354-510)||(11407928-11408086)
chr1 (4-108)||(34117753-34117857)
chr1 (15-118)||(39709311-39709414)
chr1 (450-518)||(615823-615891)
chr1 (331-430)||(26236677-26236776)
chr1 (331-398)||(615759-615826)
chr1 (354-423)||(39709030-39709099)
chr1 (445-506)||(26236622-26236684)
chr1 (341-409)||(14350994-14351062)
[»] chr7 (5 HSPs)
chr7 (335-547)||(3302577-3302790)
chr7 (1-118)||(39020495-39020612)
chr7 (2-112)||(1778286-1778396)
chr7 (3-118)||(3302134-3302248)
chr7 (11-93)||(11698669-11698750)
[»] chr3 (6 HSPs)
chr3 (8-118)||(43275652-43275762)
chr3 (1-112)||(18270019-18270128)
chr3 (335-398)||(18269763-18269826)
chr3 (3-82)||(893308-893386)
chr3 (331-405)||(43275977-43276051)
chr3 (450-506)||(18269710-18269766)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-82)||(54168-54249)
[»] scaffold0157 (1 HSPs)
scaffold0157 (434-511)||(35070-35140)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 4e-95; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 331 - 551
Target Start/End: Complemental strand, 23054357 - 23054137
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| | ||||||||||||    
T  23054357 tcagcaccaccatgaaaaccgccataaagcaccacgaaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatatgatcca 23054258  T
Q  431 acacaccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacg 530  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23054257 gcacaccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctcagacccacg 23054158  T
Q  531 aaaatcaaacaaccaccgaca 551  Q
    |||| ||||||||||| ||||    
T  23054157 aaaaccaaacaaccactgaca 23054137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 331 - 551
Target Start/End: Complemental strand, 47518575 - 47518354
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    |||||| ||||| ||||||| | |||||| ||||| ||| ||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||| ||    
T  47518575 tcagcaacaccaagaaaaccaccatgaagtaccacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattca 47518476  T
Q  431 acac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccac 529  Q
     ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||     
T  47518475 tcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaacatagagagaaaacaaatcaaatagtctgagacccat 47518376  T
Q  530 gaaaatcaaacaaccaccgaca 551  Q
    ||||| ||||||||||||||||    
T  47518375 gaaaaccaaacaaccaccgaca 47518354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 335 - 551
Target Start/End: Original strand, 53202268 - 53202485
Alignment:
Q  335 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaacac 434  Q
    |||||||| |||||||   |||||| ||||| |||||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||| || |||    
T  53202268 caccaccaagaaaaccatcatgaagtaccacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcac 53202367  T
Q  435 -accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaa 533  Q
     ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53202368 caccatcgtgaccgatctgtcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaa 53202467  T
Q  534 atcaaacaaccaccgaca 551  Q
    | ||||||||||| ||||    
T  53202468 accaaacaaccacagaca 53202485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 354 - 504
Target Start/End: Original strand, 6410012 - 6410164
Alignment:
Q  354 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaacac-accatcgtgactgatcca 452  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||   |||| ||||| | | | ||| ||||||| ||||||    
T  6410012 atgaagcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgaccgatcca 6410111  T
Q  453 tcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagagaaa 504  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||||||||||    
T  6410112 tcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 6410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 23054689 - 23054571
Alignment:
Q  1 agtcgggaataaaacccc-aaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaaccttt 99  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||| || ||||||| | ||    
T  23054689 agtcgggaataaaacccccaaacaccacaattagctctctcaagcaccttcatccaaaacacacctcacaaagaaccgcaaaagccagccaaaaatcctt 23054590  T
Q  100 gtaccatcatacagcaagg 118  Q
    ||||||||||||| |||||    
T  23054589 gtaccatcatacaacaagg 23054571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 47518869 - 47518762
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||| |||| ||| ||||||||||| |||||||||| | |||    
T  47518869 agtcgggaaaaaaacctcaaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaacaaccgcaaaagccaaccaaaaatccttg 47518770  T
Q  101 taccatca 108  Q
    ||||||||    
T  47518769 taccatca 47518762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 53201968 - 53202065
Alignment:
Q  11 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 108  Q
    |||||||||||||||||||| |||||||| ||||||||||| || |||||||||||  ||| |||||||||||  ||||||||| | |||||||||||    
T  53201968 aaaaccccaaacaccaccatgagctctcctaagcaccttcatccaaaacacacctcgtaaacaaccgcaaaagctaaccaaaaatccttgtaccatca 53202065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 34227401 - 34227304
Alignment:
Q  11 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 108  Q
    |||| |||||||||||||||| | ||||| ||||||||||| || |||||||||||| ||| |||| |||||| |||||||||| | |||||||||||    
T  34227401 aaaaacccaaacaccaccattggttctcctaagcaccttcatccaaaacacacctcataaacaaccacaaaagccaaccaaaaatccttgtaccatca 34227304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 24957626 - 24957548
Alignment:
Q  434 caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagagaaaacaaatc 511  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||  |||||| ||||||||||||    
T  24957626 caccttcgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacccacctccaagaaagaaaacaaatc 24957548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 34227142 - 34227058
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaa 415  Q
    |||||||||||| |||| || | |||||| |||||  |||||||||||||||||| ||| |||||||||  ||||||||||||||    
T  34227142 tcagcaccaccaagaaagccaccatgaagtaccacagaccaacacaaccaaagatccattgaaaccatataagttcataagcgaa 34227058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 24957997 - 24957897
Alignment:
Q  11 aaaaccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatcat 109  Q
    ||||||||||||| |||||||| || |||| |||||||||| ||  |||||||||||  ||||||||| ||||  | |||||||||| || |||||||||    
T  24957997 aaaaccccaaacaacaccattaactttcccgagcaccttcatccaaaaacacacctcttaaagaaccgtaaaaaccgaccaaaaacccttataccatcat 24957898  T
Q  110 a 110  Q
    |    
T  24957897 a 24957897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 6409723 - 6409794
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaagaa 74  Q
    |||||| |||||| |||||| |||||||||||||||| |||||||||| ||  ||||||||||| |||||||    
T  6409723 cgggaagaaaacctcaaacaacaccattagctctcccgagcaccttcatccaaaaacacacctcccaaagaa 6409794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 12469406 - 12469342
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaac 395  Q
    ||||||||||||||  |||| | |||||| ||||| ||||||||||||||| ||| |||||||||    
T  12469406 tcagcaccaccatggtaaccaccatgaaggaccacaaaccaacacaaccaaggatccatcgaaac 12469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 12485407 - 12485337
Alignment:
Q  434 caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatc 511  Q
    |||||||||||||| |||||||||||  | |||||||| ||||||||||||       ||||||||||||||||||||    
T  12485407 caccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc-------accaagagagaaaacaaatc 12485337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 19658059 - 19658126
Alignment:
Q  8 aataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaa-acacacctcacaaagaa 74  Q
    |||||||||||||||| || |||| || |||||||||||||||| || || ||||||||| |||||||    
T  19658059 aataaaaccccaaacaacatcatttgcactcccaagcaccttcatccaaacacacacctcccaaagaa 19658126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 54199597 - 54199661
Alignment:
Q  8 aataaaaccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaa 71  Q
    |||||||||||||||| |||||||| ||||||||  |||||||| ||  ||||||||||| ||||    
T  54199597 aataaaaccccaaacatcaccattatctctcccagtcaccttcatccaaaaacacacctcccaaa 54199661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 5e-79; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 331 - 551
Target Start/End: Original strand, 17375275 - 17375496
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    ||||||||||||||||||| |  |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  17375275 tcagcaccaccatgaaaactgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatgatcca 17375374  T
Q  431 acac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccac 529  Q
     ||| ||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||    
T  17375375 tcaccaccatcgtgatcgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaatagagaaaacgaatcaaatagtgtgagagccac 17375474  T
Q  530 gaaaatcaaacaaccaccgaca 551  Q
    ||||| ||||||||||||||||    
T  17375475 gaaaaccaaacaaccaccgaca 17375496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 331 - 548
Target Start/End: Complemental strand, 17282069 - 17281850
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaa-ccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcc 429  Q
    |||||||||||| ||||||| | |||||| ||||| || ||||||||||||||||| |||||||||||||  ||||||||||| || |||||||||||||    
T  17282069 tcagcaccaccaagaaaaccaccatgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagatatgatcc 17281970  T
Q  430 aacac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagaccca 528  Q
    | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  17281969 atcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatcaaatagtctgagaccta 17281870  T
Q  529 cgaaaatcaaacaaccaccg 548  Q
    |||||| |||||||||||||    
T  17281869 cgaaaaacaaacaaccaccg 17281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 331 - 542
Target Start/End: Complemental strand, 1551722 - 1551510
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    ||||||| |||| ||||||| | | |||| ||||| ||||||||||||||||||| ||||||||| |||  |||||||||||||| ||| | ||||||||    
T  1551722 tcagcactaccaagaaaaccaccacgaagtaccacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacatgatcca 1551623  T
Q  431 acac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccac 529  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  1551622 tcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaatagagaaaacaaatcaaatagtctgagacccac 1551523  T
Q  530 gaaaatcaaacaa 542  Q
    |||||||||||||    
T  1551522 gaaaatcaaacaa 1551510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 336 - 551
Target Start/End: Original strand, 1895413 - 1895629
Alignment:
Q  336 accaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaacac- 434  Q
    ||||||| ||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||  || |||     
T  1895413 accaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcacc 1895512  T
Q  435 accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaa 534  Q
    |||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  1895513 accatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtctgagacccacaaaaa 1895612  T
Q  535 tcaaacaaccaccgaca 551  Q
     ||||||||||||||||    
T  1895613 ccaaacaaccaccgaca 1895629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 4869335 - 4869448
Alignment:
Q  3 tcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgta 102  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  | |||||||||||||| |||| | ||||| |||||    
T  4869335 tcgggaataaaaccccaaacaccaccattagctctcccaaacaccttcacccaaaacacacct--cgaagaaccgcaaaagccaactacaaacccttgta 4869432  T
Q  103 ccatcatacagcaagg 118  Q
    |||||||||| |||||    
T  4869433 ccatcatacaacaagg 4869448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 34659960 - 34660072
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 103  Q
    |||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||  | |||||||||||||| |||| ||||| | ||||||    
T  34659960 cgggaataaacccccaaacaccacccttagctctcccatgcaccttcacccgaaacacacct--cgaagaaccgcaaaagccaacaaaaaatccttgtac 34660057  T
Q  104 catcatacagcaagg 118  Q
    ||||||||| |||||    
T  34660058 catcatacaacaagg 34660072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 3921301 - 3921402
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 103  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||  |||||||||||| ||| ||||||||||| |||||||||| | ||||||    
T  3921301 cgggaaaaaaaccccaaacaccaccattagctctcctgagcaccttcaccaaaaacacacctcataaacaaccgcaaaagccaaccaaaaatccttgtac 3921400  T
Q  104 ca 105  Q
    ||    
T  3921401 ca 3921402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 1895118 - 1895215
Alignment:
Q  11 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 108  Q
    ||||||| ||||||||||||||||||||| ||||||||||| || ||||| |||||| ||| ||||||||||| |||||||||| | |||||||||||    
T  1895118 aaaaccctaaacaccaccattagctctcctaagcaccttcatccaaaacaaacctcataaacaaccgcaaaagccaaccaaaaatccttgtaccatca 1895215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 17375014 - 17375090
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaa 81  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  17375014 cgggaataaaaccccaaacaccac-attagctatcccaagcaccttcacccaaaacacacctcacaaagaacggcaaa 17375090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 34660284 - 34660351
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 398  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  34660284 tcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 1551990 - 1551897
Alignment:
Q  15 ccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 108  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||| ||||| ||| || |||||||| |||||||||| | |||||||||||    
T  1551990 ccccaaacaccaccattagctctcctaagcaccttcatccaaaacacgcctcataaacaatcgcaaaagccaaccaaaaatccttgtaccatca 1551897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 17282370 - 17282268
Alignment:
Q  6 ggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtacca 105  Q
    |||| |||||| ||||||||||| |||||||||  ||||||||||| || |||||||||||| ||| |||||| |||| |||||||||| | ||||||||    
T  17282370 ggaaaaaaacctcaaacaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaacaaccgcgaaagccaaccaaaaatccttgtacca 17282271  T
Q  106 tca 108  Q
    |||    
T  17282270 tca 17282268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 446 - 499
Target Start/End: Original strand, 3921683 - 3921736
Alignment:
Q  446 tgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagag 499  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3921683 tgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagag 3921736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 450 - 518
Target Start/End: Original strand, 4869707 - 4869775
Alignment:
Q  450 ccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagt 518  Q
    ||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  4869707 ccatcaccacctatgttgctatcaaacgtaacctccaccgcaaccaagagagaaaacgaatcaaatagt 4869775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 331 - 430
Target Start/End: Original strand, 3921590 - 3921689
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    |||||||||||| ||||||| |  ||||| ||||| |||||||||||||||| || |||| ||||||||  ||||||||||||||  |||||||||||||    
T  3921590 tcagcaccaccaagaaaaccaccgtgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatatgatcca 3921689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 4869643 - 4869710
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 398  Q
    ||||||||| |||||||||||| |||||||||| | |||||| |||||||||||| |||| |||||||    
T  4869643 tcagcaccatcatgaaaaccgccatgaagcaccgcaaaccaaaacaaccaaagatccatcaaaaccat 4869710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 507
Target Start/End: Complemental strand, 38531207 - 38531146
Alignment:
Q  447 gatccatcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagagaaaaca 507  Q
    ||||||||||||| |||||||||| |||||| |||||||| |||| ||||||| ||||||||    
T  38531207 gatccatcaccacatatgttgcgaacaaacaaaacctccatccaccaccaagaaagaaaaca 38531146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 548
Target Start/End: Original strand, 4140576 - 4140613
Alignment:
Q  511 caaatagtctgagacccacgaaaatcaaacaaccaccg 548  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  4140576 caaatagtctgagacccacgaaaaccaaagaaccaccg 4140613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 335 - 548
Target Start/End: Complemental strand, 7767125 - 7766911
Alignment:
Q  335 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaacac 434  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||| ||| |||||||||||||| |||    
T  7767125 caccaccatgaaacccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcac 7767026  T
Q  435 -accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaa 533  Q
     ||||| ||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7767025 caccattgtggccgatcaatcaccacctatgttgcgagcaaacataacctccatcacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaa 7766926  T
Q  534 atcaaacaaccaccg 548  Q
    | |||||||||||||    
T  7766925 accaaacaaccaccg 7766911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 331 - 551
Target Start/End: Original strand, 18696931 - 18697154
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||| || |||| |||||| |||||||||||||| ||||||||||||||    
T  18696931 tcagcaacaccatgaaaaacgccatgaagcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatcca 18697030  T
Q  431 aca-caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccac--cacaaccaagagagaaaacaaatcaaatagtctgagaccc 527  Q
     || |||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| | | ||||||||||||||||||||||||||    
T  18697031 tcaccaccatcgtgactgatccatcaccacctatgttgcgggcaaacataacctccaccacacaaccaatataaaaaacaaatcaaatagtctgagaccc 18697130  T
Q  528 acgaaaatcaaacaaccaccgaca 551  Q
    ||||||| ||||||||||||||||    
T  18697131 acgaaaaccaaacaaccaccgaca 18697154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 333 - 545
Target Start/End: Complemental strand, 27170211 - 27169997
Alignment:
Q  333 agcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaac 432  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||  || | | ||||||||||      
T  27170211 agcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatatgatccatt 27170112  T
Q  433 ac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagag-aaaacaaatcaaatagtctgagacccacg 530  Q
    || ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  27170111 accaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacg 27170012  T
Q  531 aaaatcaaacaacca 545  Q
    |||| ||||||||||    
T  27170011 aaaaccaaacaacca 27169997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 7767442 - 7767328
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 103  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  7767442 cgggaataaaaccccaaagaccaccattagctctcccaagcaccttcatccaaaacacacctcacaaagaaccgtaaaagccaaccaataacctttgtac 7767343  T
Q  104 catcatacagcaagg 118  Q
     |||||||| |||||    
T  7767342 gatcatacaacaagg 7767328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 27170528 - 27170411
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||| | |||    
T  27170528 agtcgggaataaaaccccaaacaccaccattagctctcccaagcacctttaccgaaaacacacctcacaaagaaccgcaaaagccaaccaaaaatccttg 27170429  T
Q  101 taccatcatacagcaagg 118  Q
    |||| |||| || |||||    
T  27170428 taccctcatgcatcaagg 27170411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 18696719 - 18696804
Alignment:
Q  9 ataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaa 94  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  18696719 ataaaaccccaaacaccaccgttagctctcccaagcaccttcacccgaaacacacctcacaaagaaccgcaaaagccaaccaaaaa 18696804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26656435 - 26656550
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||  | ||||||||| |||| |||| |||||||||||    
T  26656435 agtcggaaataaaaccccaaacaccacccttagctctcccaagcaccgtcacccaaaacacacct--cgaagaaccgccaaagccaactaaaaacctttg 26656532  T
Q  101 taccatcatacagcaagg 118  Q
    |||||||||||| |||||    
T  26656533 taccatcatacaacaagg 26656550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26928022 - 26928137
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||  | ||||||||| |||| |||| |||||||||||    
T  26928022 agtcggaaataaaaccccaaacaccacccttagctctcccaagcaccgtcacccaaaacacacct--cgaagaaccgccaaagccaactaaaaacctttg 26928119  T
Q  101 taccatcatacagcaagg 118  Q
    |||||||||||| |||||    
T  26928120 taccatcatacaacaagg 26928137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 446 - 548
Target Start/End: Complemental strand, 41355554 - 41355452
Alignment:
Q  446 tgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaatcaaacaacca 545  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||  |||||||||    
T  41355554 tgatccatcaccgcctatgttgcgagcaaatataacctccaccacaaccaagagagaaaacaaatcaaatagcctaagatccacggaaactaaacaacca 41355455  T
Q  546 ccg 548  Q
    |||    
T  41355454 ccg 41355452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 7271514 - 7271628
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||  ||| ||| |||||||||| |||||||||||| |||    
T  7271514 agtcgggaataaaaccccaaacaccacccttagctctctcaagcaccttcatccaaaacacac--cacgaag-accgcaaaagacaaccaaaaacccttg 7271610  T
Q  101 taccatcatacagcaagg 118  Q
    |||||||||||| |||||    
T  7271611 taccatcatacaacaagg 7271628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 7271893 - 7271960
Alignment:
Q  451 catcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7271893 catcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt 7271960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 1157634 - 1157532
Alignment:
Q  6 ggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtacca 105  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||| |||||||||| |||||||||||   ||||||||    
T  1157634 ggaaaaaaaccccaaacaccaccattagctctcctaagcaccttcatccaaaacacacctcataaacaaccgcaaaaatcaaccaaaaattgttgtacca 1157535  T
Q  106 tca 108  Q
    |||    
T  1157534 tca 1157532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 6030742 - 6030629
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||  | |||||| ||||||| |||||| ||||| |||    
T  6030742 agtcgggaataaaaccccaa-caccacccttagctctcccaagcaccttcacccaaaacacacct--cgaagaactgcaaaagccaaccacaaacc-ttg 6030647  T
Q  101 taccatcatacagcaagg 118  Q
    |||||||||||| |||||    
T  6030646 taccatcatacaacaagg 6030629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41355923 - 41355816
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    ||||||||| ||||||| ||||||||||||||||||||| | |||||||||||| ||||||| |||| ||| ||| ||||| | |||||||||| | |||    
T  41355923 agtcgggaaaaaaacccaaaacaccaccattagctctcctacgcaccttcacccaaaacacatctcataaataacagcaaacgccaaccaaaaatccttg 41355824  T
Q  101 taccatca 108  Q
    ||||||||    
T  41355823 taccatca 41355816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 551
Target Start/End: Original strand, 26656827 - 26656925
Alignment:
Q  450 ccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaatcaaacaaccaccga 549  Q
    |||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||| |||||||||||   || ||||  ||||||||||||| |||||    
T  26656827 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaaccga 26656923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 551
Target Start/End: Original strand, 26928414 - 26928512
Alignment:
Q  450 ccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaatcaaacaaccaccga 549  Q
    |||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||| |||||||||||   || ||||  ||||||||||||| |||||    
T  26928414 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaaccga 26928510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 450 - 518
Target Start/End: Complemental strand, 6030391 - 6030323
Alignment:
Q  450 ccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagt 518  Q
    ||||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||| |||||||||||    
T  6030391 ccatcaccacctatgttccgatcaaacataacatccaccgcaaccaagagagaaaacgaatcaaatagt 6030323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 7271832 - 7271892
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcg 391  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  7271832 tcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 331 - 398
Target Start/End: Complemental strand, 6030455 - 6030388
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 398  Q
    |||||||||||||||||||||  | |||||||||| ||||||||||||||||||| ||||||||||||    
T  6030455 tcagcaccaccatgaaaaccgtcaggaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 41355624 - 41355548
Alignment:
Q  354 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||  ||||||| ||||||  |||||||||||||    
T  41355624 atgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatcca 41355548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 38958574 - 38958483
Alignment:
Q  11 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatca 108  Q
    |||| |||||||||||||||||||||||| |||      ||||| ||||||| |||| ||| | ||||||||| |||||||||| | |||||||||||    
T  38958574 aaaatcccaaacaccaccattagctctcctaag------cacccaaaacacatctcataaatatccgcaaaagccaaccaaaaatccttgtaccatca 38958483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 38958295 - 38958230
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaacc 396  Q
    ||||||||| ||  |||||| | |||||| | ||| ||||||||||||||||||| ||||||||||    
T  38958295 tcagcaccatcaaaaaaaccaccatgaagtatcacaaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 6989540 - 6989576
Alignment:
Q  11 aaaaccccaaacaccaccattagctctcccaagcacc 47  Q
    |||||||||||||||| |||||||||||| |||||||    
T  6989540 aaaaccccaaacaccatcattagctctcctaagcacc 6989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 3e-74; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 331 - 551
Target Start/End: Original strand, 21881465 - 21881686
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    ||||||||||||||| ||| || |||||||||||| |||||||| |||||||||| |||||||||||||  |||||||||||||| ||||||||||||||    
T  21881465 tcagcaccaccatgataactgccatgaagcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatatgatcca 21881564  T
Q  431 acac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccac 529  Q
     ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||    
T  21881565 tcaccaccatcgtgaccgatccatcaccacctttgttgcgagcaaacataacctccgccacagccaagagagaaaacgaatcaaatagtctgagagccac 21881664  T
Q  530 gaaaatcaaacaaccaccgaca 551  Q
    ||||| |||||||| |||||||    
T  21881665 gaaaaccaaacaacgaccgaca 21881686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 331 - 542
Target Start/End: Original strand, 20740576 - 20740788
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    |||||||||||| ||||||| | |||||| ||||  ||||||||||||||||||| |||||||||||||  ||||||||| |||| ||||||||||||||    
T  20740576 tcagcaccaccaagaaaaccaccatgaagtaccataaaccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatatgatcca 20740675  T
Q  431 acac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccac 529  Q
     ||| |||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  20740676 tcaccaccatcgtgaccaatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagagagaaaacaaatcaaatagtttgagacccac 20740775  T
Q  530 gaaaatcaaacaa 542  Q
    ||||| |||||||    
T  20740776 gaaaaccaaacaa 20740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 21881124 - 21881238
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 103  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  21881124 cgggaataaaacctcaaacaccaccattagctctcccaagcaccttcacccaaaacacacctcacaaagaactgcaaaagtcaaccaaaaacccttgtac 21881223  T
Q  104 catcatacagcaagg 118  Q
    ||||||||| |||||    
T  21881224 catcatacaacaagg 21881238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 34213806 - 34213705
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 103  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  34213806 cgggaataaaatcccaaacaccaccattagctctcccaagcaccatatcccaaaacacacctcacaaagaatcgcaaaagccaaccaaaaacccttgtac 34213707  T
Q  104 ca 105  Q
    ||    
T  34213706 ca 34213705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 20740310 - 20740414
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 103  Q
    |||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||| |||| ||| || |||||||| |||| ||||| | ||||||    
T  20740310 cgggaaaaaaacctcaaacaccaccattagctctcctaagcaccttcacccaaaacacatctcataaacaatcgcaaaagccaactaaaaatccttgtac 20740409  T
Q  104 catca 108  Q
    |||||    
T  20740410 catca 20740414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 22577492 - 22577574
Alignment:
Q  15 ccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacc 96  Q
    ||||||||| |||||||||||||||||| |||||||| ||  ||| ||||||| |||||||| ||||||  | ||||||||||    
T  22577492 ccccaaacaacaccattagctctcccaaacaccttcatccaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaacc 22577574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 30845559 - 30845633
Alignment:
Q  335 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcata 409  Q
    |||||||||| ||||| | | |||||||||  |||||||||||||||| || |||| ||||||||| || |||||    
T  30845559 caccaccatggaaaccaccacgaagcaccataaaccaacacaaccaaaaattcatcaaaaccataacagatcata 30845633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 333 - 547
Target Start/End: Original strand, 10408825 - 10409040
Alignment:
Q  333 agcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaac 432  Q
    ||||||||||| |||||| | |||||||||||| ||||||||||||||||||| |||||||||||||| |  ||||||||||| |||||||||||||| |    
T  10408825 agcaccaccattaaaacctccatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatgatccatc 10408924  T
Q  433 ac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacga 531  Q
    || ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||| |    
T  10408925 accaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagagaaaaaatcaaatagtttgagacccacaa 10409024  T
Q  532 aaatcaaacaaccacc 547  Q
    ||| |||| |||||||    
T  10409025 aaaccaaataaccacc 10409040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 338 - 548
Target Start/End: Original strand, 5994635 - 5994846
Alignment:
Q  338 caccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaaca-cac 436  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||||||||| | |||||||||||| || |||    
T  5994635 caccatgaataccgccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatccatcaccac 5994734  T
Q  437 catcgtgactgatccatcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaat 535  Q
    |||| |||  ||||||| | || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||| ||||||||||     
T  5994735 catcatgatcgatccattagca-ctatgttgcgagcaaacataacatccatccacaaccaagagagaaaacaaatcaaacagtttgaggcccacgaaaac 5994833  T
Q  536 caaacaaccaccg 548  Q
    ||||||| |||||    
T  5994834 caaacaatcaccg 5994846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 5994314 - 5994424
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    ||||||||||| ||| ||||||||||||||||  ||||||||||||||||| || ||||||||||| |||| ||||||||||| |||||||||||| |||    
T  5994314 agtcgggaatagaacgccaaacaccaccattaattctcccaagcaccttcatccaaaacacacctctcaaaaaaccgcaaaagccaaccaaaaacc-ttg 5994412  T
Q  101 taccatcataca 112  Q
    ||||||||||||    
T  5994413 taccatcataca 5994424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 331 - 510
Target Start/End: Original strand, 6444033 - 6444214
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    ||||| |||||||||||||| | | |||| ||||| ||||||||||| ||||||| | |||||||||||| || ||||| |||||   | || |||||||    
T  6444033 tcagccccaccatgaaaaccaccacgaagtaccacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatctgatcca 6444132  T
Q  431 aca-caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagagaaaacaaat 510  Q
     || |||| | |||||  |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||    
T  6444133 tcaccacctttgtgaccaatccataaccacctaagttgcgagcaaacataacctccatccacaaccaagagagaaatcaaat 6444214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 10408533 - 10408646
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 103  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||| | |||||| |||||||||||  ||||||    
T  10408533 cgggaataaagccccaaacaccaccattagctctcccaagcaccttcacgcaaagcactcctcacaaagaatcacaaaagccaaccaaaaactcttgtac 10408632  T
Q  104 catcatacagcaag 117  Q
    ||||| ||| ||||    
T  10408633 catcaaacaacaag 10408646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20861008 - 20861081
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaa 74  Q
    ||||| |||||||||| ||||||| | ||||||||||| ||| |||||||| || ||||||| |||||||||||    
T  20861008 agtcgagaataaaaccacaaacactatcattagctctcgcaaacaccttcatccaaaacacatctcacaaagaa 20861081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 332 - 548
Target Start/End: Original strand, 34117971 - 34118190
Alignment:
Q  332 cagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaa 431  Q
    |||||||||||||||||  || |||| ||||||| || |||||||||||||||| ||  |||||||||| |||||||||||||| ||||||||||||||     
T  34117971 cagcaccaccatgaaaaatgccatgaggcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccat 34118070  T
Q  432 ca-caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccac--cacaaccaagagagaaaacaaatcaaatagtctgagaccca 528  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||| ||||||| |||    
T  34118071 caccaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagatcca 34118170  T
Q  529 cgaaaatcaaacaaccaccg 548  Q
    ||||||  ||||||||||||    
T  34118171 cgaaaactaaacaaccaccg 34118190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 331 - 548
Target Start/End: Original strand, 34654976 - 34655171
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||| ||||||||| | |||||||||||| ||||||||          
T  34654976 tcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctagatat------ 34655069  T
Q  431 acacaccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacg 530  Q
                    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34655070 ----------------gatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaaaagagaaaacaaatcaaatagtctgagacccacg 34655153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 34654645 - 34654760
Alignment:
Q  4 cgggaataaaacccc-aaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgta 102  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||| || |||||    
T  34654645 cgggaataaaacccccaaacaccaccattagctctcccaaacaccttcacccaaagcacacctcacaaagaaccacaaaagtcaaccaaaatcccttgta 34654744  T
Q  103 ccatcatacagcaagg 118  Q
    |||||||||| |||||    
T  34654745 ccatcatacaacaagg 34654760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 447 - 551
Target Start/End: Complemental strand, 39709028 - 39708925
Alignment:
Q  447 gatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaatcaaacaaccac 546  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||| ||||| |||||||||||    
T  39709028 gatccatcaccacctatattgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccac 39708930  T
Q  547 cgaca 551  Q
    |||||    
T  39708929 cgaca 39708925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 615446 - 615561
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||||||| || ||||||||||  | ||||||||||||||||||||| ||||| |||    
T  615446 agtcgggaataaaaccctaaacaccacccttagctctcccaaacaccttcatccaaaacacacct--cgaagaaccgcaaaagtcaaccacaaacccttg 615543  T
Q  101 taccatcatacagcaagg 118  Q
    |||||||||||| |||||    
T  615544 taccatcatacaacaagg 615561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 354 - 510
Target Start/End: Complemental strand, 11408086 - 11407928
Alignment:
Q  354 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaacac-accatcgtgactgatcca 452  Q
    |||||||||||| |||||||||||||||||||   |||||||||||| |  |||||||| || | | || ||||||| ||| ||| ||||| | ||||||    
T  11408086 atgaagcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggccgatcca 11407987  T
Q  453 tcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagagaaaacaaat 510  Q
    ||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  11407986 tcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaacaaat 11407928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 34117753 - 34117857
Alignment:
Q  4 cgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtac 103  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  34117753 cggggataaaaccccaaacaccaacgttagctctcccaagcaccttcatccaaaacatacctcacaaagaaccgcaaaagccaaccaaaaatccttgtac 34117852  T
Q  104 catca 108  Q
    |||||    
T  34117853 catca 34117857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 39709414 - 39709311
Alignment:
Q  15 ccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatcatacagc 114  Q
    |||||||||||||||||||||||||||||  ||||  ||| |||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||| |    
T  39709414 ccccaaacaccaccattagctctcccaagtgccttttcccaaaacacacctcacaaagaactgcaaaagccaaccaaaaacccttgtaccgtcatacatc 39709315  T
Q  115 aagg 118  Q
    ||||    
T  39709314 aagg 39709311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 518
Target Start/End: Original strand, 615823 - 615891
Alignment:
Q  450 ccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagt 518  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||    
T  615823 ccatcaccacctatgttgcgatcaaacataatctccaccacaaccaagagagaaaacgaatcaaatagt 615891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 331 - 430
Target Start/End: Complemental strand, 26236776 - 26236677
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatcca 430  Q
    ||||||||| |||||||||| | |||||||||||| ||||||| ||||||||||| ||||||| |||||| || ||||||| ||| | |||| |||||||    
T  26236776 tcagcaccatcatgaaaaccaccatgaagcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctgatcca 26236677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 615759 - 615826
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 398  Q
    |||||||||||||||||||||  |||||||||||| ||| ||||||||||||||| |||| |||||||    
T  615759 tcagcaccaccatgaaaaccgtcatgaagcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 39709099 - 39709030
Alignment:
Q  354 atgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagata 423  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| |||||||| | |||||    
T  39709099 atgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagata 39709030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 506
Target Start/End: Complemental strand, 26236684 - 26236622
Alignment:
Q  445 ctgatccatcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagagaaaac 506  Q
    |||||||||||||| ||||||| |||| |||||||||||||| |||| ||| |||||||||||    
T  26236684 ctgatccatcaccatctatgtttcgagtaaacataacctccatccaccaccgagagagaaaac 26236622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 14351062 - 14350994
Alignment:
Q  341 catgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcata 409  Q
    |||||||||| | | ||| |||||| |||||||||||| ||| || |||| |||||||||||| |||||    
T  14351062 catgaaaaccaccacgaaccaccacaaaccaacacaacaaaaaattcatcaaaaccataatagatcata 14350994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 335 - 547
Target Start/End: Original strand, 3302577 - 3302790
Alignment:
Q  335 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagttcataagcgaatctagatatgatccaacac 434  Q
    ||||||||||||||| |  ||||||||||||  ||||| |||||||||||| ||||||||| |||| |||| |||||||||||||||||||||  | |||    
T  3302577 caccaccatgaaaactgtcatgaagcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatatgatgtatcac 3302676  T
Q  435 -accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaa 533  Q
     ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| ||||||||    
T  3302677 caccatcgtgatcgatctatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagaggaaatgaatcaaatagtctgagatccacgaaa 3302776  T
Q  534 atcaaacaaccacc 547  Q
    | ||||||||||||    
T  3302777 accaaacaaccacc 3302790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 39020612 - 39020495
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39020612 agtcgggaatacaaccccaaacaccaccattagctctcccaagcaccctcaccctaaacacacctcataaagaaccgcaaaagtcaaccaaaaacctttg 39020513  T
Q  101 taccatcatacagcaagg 118  Q
    ||||||||||||||||||    
T  39020512 taccatcatacagcaagg 39020495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 1778286 - 1778396
Alignment:
Q  2 gtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgt 101  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||||| || | ||||||||| |||||||||||||||| ||| |||||||| ||||    
T  1778286 gtcgggaataaaaccccaaacatcaccattagccctcccaaacaccttcatccaacacacacctcccaaagaaccgcaaaagccaaacaaaaacccttgt 1778385  T
Q  102 accatcataca 112  Q
    |||||||||||    
T  1778386 accatcataca 1778396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 3302134 - 3302248
Alignment:
Q  3 tcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgta 102  Q
    ||||||| |||| | ||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||||||| ||| |||||||||||| |||||    
T  3302134 tcgggaacaaaatctcaaacaccaccattagctctcccaaacaccttcacacaaaacacacttcacagagaaccgcagaagccaaccaaaaacc-ttgta 3302232  T
Q  103 ccatcatacagcaagg 118  Q
    |||||||||| |||||    
T  3302233 ccatcatacaacaagg 3302248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 11698750 - 11698669
Alignment:
Q  11 aaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaa 93  Q
    |||||||||||||| |||||||||||||| |||||||||||||| |||||||||| | ||| || |||||||| |||||||||    
T  11698750 aaaaccccaaacacaaccattagctctcctaagcaccttcaccc-aaacacaccttataaacaatcgcaaaagccaaccaaaa 11698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 43275652 - 43275762
Alignment:
Q  8 aataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttgtaccatc 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  43275652 aataaaaccctaaacaccaccattagctctcccaagcaccttcatccaaaacacacctcacaaagaaccgcaaaaggcaaccaaaaacccttgtaccatc 43275751  T
Q  108 atacagcaagg 118  Q
    ||||| |||||    
T  43275752 atacaacaagg 43275762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 18270128 - 18270019
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaagtcaaccaaaaacctttg 100  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  | ||||||||||||||||||| | ||||| |||    
T  18270128 agtcgagaataaaaccccaaacaccacccttagctctcccaagcaccttcacccaaaacacacct--cgaagaaccgcaaaagtcaactacaaacccttg 18270031  T
Q  101 taccatcataca 112  Q
    ||||||||||||    
T  18270030 taccatcataca 18270019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 18269826 - 18269763
Alignment:
Q  335 caccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccat 398  Q
    |||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||    
T  18269826 caccaccatgaaaaccaccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 893386 - 893308
Alignment:
Q  3 tcgggaataaaaccccaaacaccaccattagctctcccaagcaccttcaccctaaacacacctcacaaagaaccgcaaaa 82  Q
    |||||||||||| | ||||||||| ||||| ||||||||||||||||||    |||||||||||||||||||||||||||    
T  893386 tcgggaataaaatcacaaacaccatcattaactctcccaagcaccttca-gtaaaacacacctcacaaagaaccgcaaaa 893308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 331 - 405
Target Start/End: Original strand, 43275977 - 43276051
Alignment:
Q  331 tcagcaccaccatgaaaaccgcaatgaagcaccacgaaccaacacaaccaaagatacatcgaaaccataatagtt 405  Q
    ||||||||||||| ||||  |  |||||||||||| ||||||||||||||||||| |||||||| ||||| ||||    
T  43275977 tcagcaccaccataaaaattgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaatcataacagtt 43276051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 18269766 - 18269710
Alignment:
Q  450 ccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaac 506  Q
    ||||||||||||||||| ||| || |||||||||||| || || |||||||||||||    
T  18269766 ccatcaccacctatgtttcgatcagacataacctccatcataatcaagagagaaaac 18269710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 54168 - 54249
Alignment:
Q  1 agtcgggaataaaaccccaaacaccaccattagctctcccaagcaccttca-ccctaaacacacctcacaaagaaccgcaaaa 82  Q
    |||||| |||||||||||||| || |||||||||||||||||||||||||| ||  |||||||| |  |||||||||||||||    
T  54168 agtcggtaataaaaccccaaaaac-accattagctctcccaagcaccttcatccaaaaacacactttccaaagaaccgcaaaa 54249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 511
Target Start/End: Original strand, 35070 - 35140
Alignment:
Q  434 caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatc 511  Q
    |||||||||||||| |||||||||||  | |||||||| ||||||||||||       ||||||||||||||||||||    
T  35070 caccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc-------accaagagagaaaacaaatc 35140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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