View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7342_low_2 (Length: 401)

Name: NF7342_low_2
Description: NF7342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7342_low_2
NF7342_low_2
[»] chr7 (2 HSPs)
chr7 (17-295)||(38231680-38231958)
chr7 (333-401)||(38231574-38231642)
[»] chr6 (2 HSPs)
chr6 (156-285)||(7694623-7694752)
chr6 (333-396)||(7694802-7694866)
[»] chr8 (3 HSPs)
chr8 (156-285)||(30151835-30151964)
chr8 (333-396)||(30152020-30152084)
chr8 (159-199)||(9059557-9059596)
[»] chr4 (3 HSPs)
chr4 (156-203)||(55863268-55863315)
chr4 (239-285)||(55863208-55863254)
chr4 (160-203)||(24626015-24626058)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 38231958 - 38231680
Alignment:
Q  17 atatttgcaacaaacaaaagagaccataagtagtttcctagtttatacacacttaacacagtcttttaacaagattgaacaaagaaaagagagaatgtct 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38231958 atatttgcaacaaacaaaagagaccataagtagtttcctaatttatacacacttaacacagtcttttaacaagattgaacaaagaaaagagagaatgtct 38231859  T
Q  117 aactacaaactcgtttaaatatacaatataacttctaacgtggcatttagcttggaaccattgaagtattggtctatgatggaccaannnnnnncaacct 216  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||       |||| |    
T  38231858 aactacaaactcgtttaaatagacaatataacttctaacgtgtcatttagcttggaaccattgaagtattggtccatgatggaccaatttttttcaactt 38231759  T
Q  217 tagattagatcatcctagtaactcttatcatagtccagccacaccaaatctaactcatcaacttcatctttcatagcaa 295  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  38231758 tagattagatcatcctagtaactcttatcataatccagccacaccaaatctaactcatcaacttcatctctcatagcaa 38231680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 38231642 - 38231574
Alignment:
Q  333 aaagtggttgagctcattacaaagtctaaaaacttaatactaataatcaaatagattgaaattagacta 401  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38231642 aaagtagttgagctcattacaaagtctaaaaacttaatactaataatcaaatagattgaaattagacta 38231574  T

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Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 7694623 - 7694752
Alignment:
Q  156 gtggcatttagcttggaaccattgaagtattggtctatgatggaccaannnnnnncaaccttagattagatcatcctagtaactcttatcatagtccagc 255  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||       |||||||||||||||||||||||| || ||||||||||||||| |    
T  7694623 gtggcatttagcttggacccattgaagtattggtccatgatggaccaatttttttcaaccttagattagatcatcctagcaattcttatcatagtccatc 7694722  T
Q  256 cacaccaaatctaactcatcaacttcatct 285  Q
    ||||||||||||||||||||||||||||||    
T  7694723 cacaccaaatctaactcatcaacttcatct 7694752  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 7694802 - 7694866
Alignment:
Q  333 aaagtggttgagctcattacaaa-gtctaaaaacttaatactaataatcaaatagattgaaatta 396  Q
    ||||||| ||||||||||||||| || ||||| |||||||||||||||| || ||||||||||||    
T  7694802 aaagtggctgagctcattacaaatgtataaaagcttaatactaataatcgaagagattgaaatta 7694866  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 30151835 - 30151964
Alignment:
Q  156 gtggcatttagcttggaaccattgaagtattggtctatgatggaccaannnnnnncaaccttagattagatcatcctagtaactcttatcatagtccagc 255  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||       |||||||||||||||||||| ||| || ||||||| ||||||| |    
T  30151835 gtggcatttagcttggacccattgaagtattggtccatgatggaccaatttttttcaaccttagattagatcatcatagcaattcttatcgtagtccatc 30151934  T
Q  256 cacaccaaatctaactcatcaacttcatct 285  Q
    ||||||||||| ||||||||||||||||||    
T  30151935 cacaccaaatcaaactcatcaacttcatct 30151964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 30152020 - 30152084
Alignment:
Q  333 aaagtggttgagctcattacaaa-gtctaaaaacttaatactaataatcaaatagattgaaatta 396  Q
    ||||||| ||||||||||||||| || ||||| | |||||||||||||| || ||||||||||||    
T  30152020 aaagtggctgagctcattacaaatgtataaaagcgtaatactaataatcgaagagattgaaatta 30152084  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 9059557 - 9059596
Alignment:
Q  159 gcatttagcttggaaccattgaagtattggtctatgatgga 199  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  9059557 gcatttag-ttggatccattgaagtattggtctatgatgga 9059596  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 55863315 - 55863268
Alignment:
Q  156 gtggcatttagcttggaaccattgaagtattggtctatgatggaccaa 203  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  55863315 gtggcatttagcttggatctattgaagtattggtccatgatggaccaa 55863268  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 55863254 - 55863208
Alignment:
Q  239 tcttatcatagtccagccacaccaaatctaactcatcaacttcatct 285  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||||    
T  55863254 tcttatcatagtctatccacaccaaatctaactcataaacttcatct 55863208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 24626058 - 24626015
Alignment:
Q  160 catttagcttggaaccattgaagtattggtctatgatggaccaa 203  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||    
T  24626058 catttagcttggacccattgaggtattggtccatgatggaccaa 24626015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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