View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7342_low_3 (Length: 366)
Name: NF7342_low_3
Description: NF7342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7342_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 36713151 - 36712812
Alignment:
| Q |
9 |
gatgaattagccggttatgatctacctgcttcagcacaatatgtgtacaaccatactggtcaaaaaatgcattatgtcggtcattctcaggtgagttaat |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36713151 |
gatgaattagccggttatgatctacctgcttcagcacaatatgtgtacaaccatactggtcaaaaaatgcattatgtcggtcattctcaggtgagttaat |
36713052 |
T |
|
| Q |
109 |
ttcaaattgattattttatttatcatatttttaataactattgtgtttgtgtatgtaacaaatattgatataaatttctcagggaactttgatagctttt |
208 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36713051 |
ttcaaattgattattt-atttatcatatttttaataactattgtgtttgtgtatgtaacaaatattgatataaatttctcagggaactttgatagctttt |
36712953 |
T |
|
| Q |
209 |
gctgctttttctgaaggaaagcttcttaatgtatttagatcggctgcattacttagtccaattgctcatatgactcaaattccttccgagttaacaaaaa |
308 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36712952 |
gctgctttttctcaaggaaagcttcttaatgtatttagatcggctgcattacttagtccaattgctcatatgactcaaattccttccgagttaacaaaaa |
36712853 |
T |
|
| Q |
309 |
ttgctgctcaactctttttagctaatgtgagtgacagaaaa |
349 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
36712852 |
ttgctgctcaactctttttagctaatgtgagtgaaagaaaa |
36712812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 187 - 347
Target Start/End: Complemental strand, 36705427 - 36705267
Alignment:
| Q |
187 |
tcagggaactttgatagcttttgctgctttttctgaaggaaagcttcttaatgtatttagatcggctgcattacttagtccaattgctcatatgactcaa |
286 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||| |||| || ||||| ||| | || ||||| ||||||||||||||||||||||||||||||| || | |
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| T |
36705427 |
tcagggaactttaatagcttttgttgctttatctcaagggaaacttctgaatatgttgagatcagctgcattacttagtccaattgctcatatgaatcta |
36705328 |
T |
|
| Q |
287 |
attccttccgagttaacaaaaattgctgctcaactctttttagctaatgtgagtgacagaa |
347 |
Q |
| |
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||||| | | | |||||||| |||||||| | ||||||||||||||||||||||| |||| |
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|
| T |
36705327 |
gttcctccagggataacaaaagttgctgctgacctctttttagctaatgtgagtgatagaa |
36705267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 36663473 - 36663573
Alignment:
| Q |
23 |
ttatgatctacctgcttcagcacaatatgtgtacaaccatactggtcaaaaaatgcattatgtcggtcattctcaggtgagttaatttcaaattgattat |
122 |
Q |
| |
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||||||||| |||||||||| |||||||| ||||||||||||||| ||||||| || |||| ||||||||||||| |||| | | | |||||||||| |
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| T |
36663473 |
ttatgatcttcctgcttcagtccaatatgtttacaaccatactggtaaaaaaatccactatgcaagtcattctcaggttagttcactcctaattgattat |
36663572 |
T |
|
| Q |
123 |
t |
123 |
Q |
| |
|
| |
|
|
| T |
36663573 |
t |
36663573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 36705613 - 36705521
Alignment:
| Q |
9 |
gatgaattagccggttatgatctacctgcttcagcacaatatgtgtacaaccatactggtcaaaaaatgcattatgtcggtcattctcaggtg |
101 |
Q |
| |
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||||||||||| |||||||||| |||||||||| |||||||| |||||| |||| ||| ||||||| || ||| ||||||||||||||| |
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|
| T |
36705613 |
gatgaattagcaagttatgatctccctgcttcagttcaatatgtttacaacaatacgggtaaaaaaattcactatacaggtcattctcaggtg |
36705521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 294
Target Start/End: Original strand, 36663624 - 36663731
Alignment:
| Q |
187 |
tcagggaactttgatagcttttgctgctttttctgaaggaaagcttcttaatgtatttagatcggctgcattacttagtccaattgctcatatgactcaa |
286 |
Q |
| |
|
||||||||||||||| ||||||| | ||| ||| |||| |||||| | ||| | || ||||| ||||||||||| ||||||||||| |||||| || | |
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| T |
36663624 |
tcagggaactttgatggcttttgttaatttatctcaagggaagcttttgaatatgttgagatcagctgcattactcagtccaattgcgtatatgaatcca |
36663723 |
T |
|
| Q |
287 |
attccttc |
294 |
Q |
| |
|
| |||||| |
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|
| T |
36663724 |
aatccttc |
36663731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 336
Target Start/End: Original strand, 30904361 - 30904681
Alignment:
| Q |
23 |
ttatgatctacctgcttcagcacaatatgtgtacaaccatactggtcaaaaaatgcattatgtcggtcattctcaggtgagttaatttcaaa----ttga |
118 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| | | || || | |
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| T |
30904361 |
ttatgatcttcctgcttcagtccagtatgtgtacaaccatactggtcaaaaaatgcactacgtaggtcattctcaggtgagttaactcctaacgatttta |
30904460 |
T |
|
| Q |
119 |
ttattttatttat---catatttttaataactattgtgtttgtgtatgtaacaaatattgatataaatttctcagggaactttgatagcttttgctgctt |
215 |
Q |
| |
|
|| ||||||||| ||| ||| ||| |||||||| | |||||||||||| || |||| || |||| | |||||||||| || || |||||||||| |
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|
| T |
30904461 |
tttatttatttatttatttatgttttttaattattgtgtatatgtatgtaacaattaatgatgtacattttttagggaactttaatggcatttgctgctt |
30904560 |
T |
|
| Q |
216 |
tttctgaaggaaagcttcttaatgtatttagatcggctgcattacttagtccaattgctcatatgactcaaattccttccgagttaacaaaaattgctgc |
315 |
Q |
| |
|
| ||| ||||||| ||| | ||| | || |||| |||||||||||||||||||||||||||||| || ||||||||| | || ||||| ||||||| |
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|
| T |
30904561 |
tatctcaaggaaatcttgtgaatatgttgcgatcaactgcattacttagtccaattgctcatatgaatctaattccttcaaaatttacaaagcttgctgc |
30904660 |
T |
|
| Q |
316 |
tcaactctttttagctaatgt |
336 |
Q |
| |
|
| | || ||||||||| |||| |
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|
| T |
30904661 |
tgacctatttttagctgatgt |
30904681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 346
Target Start/End: Original strand, 30910953 - 30911125
Alignment:
| Q |
174 |
tgatataaatttctcagggaactttgatagcttttgctgctttttctgaaggaaagcttcttaatgtatttagatcggctgcattacttagtccaattgc |
273 |
Q |
| |
|
|||| ||||||| ||||||| || | || ||||||| ||||||||| |||| || ||||||||| | ||||| |||||| | |||||||||||||| |
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|
| T |
30910953 |
tgatctaaatttttcagggatctctaatggcttttgttgctttttcccaagggaatcttcttaatatgacaagatcagctgcaatgcttagtccaattgc |
30911052 |
T |
|
| Q |
274 |
tcatatgactcaaattccttccgagttaacaaaaattgctgctcaactctttttagctaatgtgagtgacaga |
346 |
Q |
| |
|
||||||| || |||| ||| || ||||| | |||||||| |||| |||||||||||||| |||||||| |
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|
| T |
30911053 |
tcatatgggtcgaattaattcggatgcaacaagacttgctgctaaactttttttagctaatgtatgtgacaga |
30911125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 30910785 - 30910866
Alignment:
| Q |
25 |
atgatctacctgcttcagcacaatatgtgtacaaccatactggtcaaaaaatgcattatgtcggtcattctcaggtgagtta |
106 |
Q |
| |
|
||||||| |||||| ||| |||||||| ||| |||||||||||||||||||||| | ||| ||| |||| ||||| ||||| |
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|
| T |
30910785 |
atgatcttcctgctacagtgcaatatgtttacgaccatactggtcaaaaaatgcactttgtaggtgattcacaggtaagtta |
30910866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 336
Target Start/End: Original strand, 11299705 - 11299852
Alignment:
| Q |
189 |
agggaactttgatagcttttgctgctttttctgaaggaaagcttcttaatgtatttagatcggctgcattacttagtccaattgctcatatgactcaaat |
288 |
Q |
| |
|
||||| |||| |||||||||| |||||||||| ||||||| ||||||||| | ||||| |||||||| | ||||||||||||||||||| || || |
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|
| T |
11299705 |
agggatctttaatagcttttgttgctttttctcaaggaaaacttcttaatatcacaagatcagctgcattgttaagtccaattgctcatatgagacacat |
11299804 |
T |
|
| Q |
289 |
tccttccgagttaacaaaaattgctgctcaactctttttagctaatgt |
336 |
Q |
| |
|
| |||| | | ||||||| |||||||| |||| |||||||| |||| |
|
|
| T |
11299805 |
tacttcagtggcaacaaaacttgctgctgaacttcttttagctgatgt |
11299852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 11293755 - 11293847
Alignment:
| Q |
189 |
agggaactttgatagcttttgctgctttttctgaaggaaagcttcttaatgtatttagatcggctgcattacttagtccaattgctcatatga |
281 |
Q |
| |
|
||||| |||| |||||||||| |||||||||| ||||||| ||||||||| | ||||| |||||||| | ||||||||||||||||||| |
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|
| T |
11293755 |
agggatctttaatagcttttgttgctttttctcaaggaaaacttcttaatatcacaagatcagctgcattgttaagtccaattgctcatatga |
11293847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 11293570 - 11293668
Alignment:
| Q |
9 |
gatgaattagccggttatgatctacctgcttcagcacaatatgtgtacaaccatactggtcaaaaaatgcattatgtcggtcattctcaggtgagttaa |
107 |
Q |
| |
|
||||||||||| | ||||||| ||||||||| |||||||| ||| | ||||| |||||||||| || ||||| |||||||| |||||||||||| |
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|
| T |
11293570 |
gatgaattagctagcaatgatcttcctgcttcaatgcaatatgtttacgatcataccagtcaaaaaatacactatgtaggtcattcacaggtgagttaa |
11293668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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