View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7343_high_1 (Length: 770)

Name: NF7343_high_1
Description: NF7343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7343_high_1
NF7343_high_1
[»] chr1 (22 HSPs)
chr1 (18-755)||(31180378-31181114)
chr1 (18-755)||(31002904-31003647)
chr1 (30-157)||(28165051-28165176)
chr1 (30-159)||(42745640-42745769)
chr1 (68-159)||(11435681-11435773)
chr1 (30-160)||(36437116-36437250)
chr1 (18-156)||(9851733-9851876)
chr1 (18-137)||(31152520-31152637)
chr1 (18-85)||(42454868-42454935)
chr1 (30-159)||(17988076-17988205)
chr1 (29-156)||(28470029-28470152)
chr1 (18-137)||(24547737-24547856)
chr1 (30-124)||(46443798-46443894)
chr1 (30-124)||(948107-948203)
chr1 (37-85)||(25130217-25130265)
chr1 (30-85)||(3574825-3574880)
chr1 (27-147)||(32800402-32800525)
chr1 (29-84)||(25381403-25381458)
chr1 (30-116)||(26072963-26073049)
chr1 (42-85)||(45691597-45691640)
chr1 (99-160)||(22516219-22516280)
chr1 (18-75)||(39150187-39150243)
[»] chr4 (16 HSPs)
chr4 (18-157)||(18838836-18838977)
chr4 (58-159)||(31707273-31707375)
chr4 (18-127)||(47231526-47231635)
chr4 (30-124)||(16572346-16572441)
chr4 (30-150)||(32599689-32599809)
chr4 (21-88)||(4960543-4960610)
chr4 (30-89)||(27032235-27032293)
chr4 (30-89)||(30615213-30615272)
chr4 (29-91)||(33721601-33721663)
chr4 (32-83)||(42312399-42312450)
chr4 (33-91)||(2632485-2632543)
chr4 (29-122)||(44720540-44720634)
chr4 (30-160)||(27184196-27184327)
chr4 (67-137)||(34320853-34320924)
chr4 (30-76)||(53325135-53325181)
chr4 (30-91)||(6087883-6087944)
[»] chr8 (11 HSPs)
chr8 (18-160)||(8251321-8251464)
chr8 (18-124)||(16890224-16890331)
chr8 (18-89)||(2152406-2152477)
chr8 (29-137)||(2207867-2207975)
chr8 (19-159)||(1445439-1445581)
chr8 (18-115)||(2520098-2520196)
chr8 (29-91)||(30653621-30653683)
chr8 (30-137)||(40314312-40314419)
chr8 (32-79)||(30870743-30870790)
chr8 (18-89)||(21504772-21504844)
chr8 (30-124)||(31658950-31659044)
[»] chr2 (23 HSPs)
chr2 (18-161)||(21794921-21795066)
chr2 (29-156)||(3270012-3270140)
chr2 (29-156)||(3268894-3269022)
chr2 (29-156)||(3269453-3269581)
chr2 (29-148)||(38214209-38214329)
chr2 (29-160)||(38496569-38496701)
chr2 (29-148)||(40664331-40664451)
chr2 (29-160)||(16781357-16781489)
chr2 (56-159)||(21229606-21229710)
chr2 (18-130)||(39063543-39063657)
chr2 (33-147)||(40442818-40442933)
chr2 (33-148)||(40503975-40504091)
chr2 (38-147)||(2761616-2761729)
chr2 (31-124)||(18423403-18423499)
chr2 (18-124)||(14200323-14200430)
chr2 (18-124)||(19285965-19286072)
chr2 (40-124)||(28239202-28239287)
chr2 (18-129)||(32872426-32872538)
chr2 (42-88)||(13027911-13027957)
chr2 (31-160)||(34309310-34309440)
chr2 (30-86)||(31365036-31365092)
chr2 (32-85)||(31405044-31405097)
chr2 (31-68)||(44883181-44883218)
[»] chr3 (16 HSPs)
chr3 (18-159)||(45261448-45261588)
chr3 (27-155)||(36659278-36659407)
chr3 (30-161)||(43320056-43320188)
chr3 (18-159)||(35455391-35455531)
chr3 (31-159)||(40344855-40344982)
chr3 (30-159)||(46918384-46918514)
chr3 (35-161)||(25294777-25294904)
chr3 (18-124)||(17003533-17003639)
chr3 (18-88)||(8825352-8825422)
chr3 (35-156)||(28695646-28695770)
chr3 (59-159)||(32211740-32211843)
chr3 (39-137)||(25286008-25286107)
chr3 (32-77)||(40729772-40729817)
chr3 (32-89)||(42279228-42279285)
chr3 (32-124)||(20265824-20265918)
chr3 (32-85)||(27828545-27828598)
[»] chr5 (15 HSPs)
chr5 (29-160)||(18705095-18705227)
chr5 (18-160)||(3629129-3629272)
chr5 (22-152)||(11690987-11691118)
chr5 (19-124)||(6688875-6688981)
chr5 (30-130)||(2225677-2225778)
chr5 (18-124)||(29948023-29948130)
chr5 (18-75)||(7735839-7735896)
chr5 (30-124)||(11983542-11983632)
chr5 (21-124)||(35547008-35547112)
chr5 (67-159)||(73647-73740)
chr5 (50-123)||(11824562-11824636)
chr5 (18-85)||(14417941-14418008)
chr5 (70-124)||(36477852-36477907)
chr5 (29-87)||(14917819-14917877)
chr5 (20-89)||(36482412-36482481)
[»] chr6 (12 HSPs)
chr6 (32-130)||(12143669-12143768)
chr6 (30-159)||(180437-180567)
chr6 (18-159)||(7926890-7927033)
chr6 (30-159)||(606534-606668)
chr6 (30-88)||(31116418-31116476)
chr6 (18-130)||(5428787-5428900)
chr6 (30-117)||(34837113-34837201)
chr6 (30-88)||(31117343-31117401)
chr6 (35-85)||(2950150-2950199)
chr6 (41-114)||(2972059-2972134)
chr6 (30-160)||(2443884-2444015)
chr6 (31-124)||(1856849-1856942)
[»] chr7 (13 HSPs)
chr7 (18-159)||(41508185-41508327)
chr7 (28-130)||(12485371-12485474)
chr7 (28-130)||(12506803-12506906)
chr7 (96-159)||(46341710-46341773)
chr7 (29-89)||(20949168-20949228)
chr7 (30-160)||(45072438-45072569)
chr7 (18-123)||(34470143-34470249)
chr7 (30-85)||(6549065-6549120)
chr7 (30-159)||(2195904-2196034)
chr7 (30-114)||(7307538-7307623)
chr7 (50-137)||(46101117-46101205)
chr7 (30-91)||(18145872-18145933)
chr7 (48-137)||(20032486-20032576)
[»] scaffold0836 (1 HSPs)
scaffold0836 (30-160)||(3119-3250)
[»] scaffold0024 (1 HSPs)
scaffold0024 (29-160)||(154436-154568)
[»] scaffold1809 (1 HSPs)
scaffold1809 (33-130)||(447-545)
[»] scaffold0088 (1 HSPs)
scaffold0088 (29-112)||(51369-51453)


Alignment Details
Target: chr1 (Bit Score: 651; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 18 - 755
Target Start/End: Complemental strand, 31181114 - 31180378
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatgattaatgattgcattggttttgat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31181114 aatattagcgagtgtatttaatgtttcacaattttctataagggtatacttgtaaaaatattcaaaaagttatatgattaatgattgcattggttttgat 31181015  T
Q  118 gttttttggttttgcttcttttgataaggaccggagggagtatgattttaacagcnnnnnnnnatccaatatcatgataccatcggtttctgctttgata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  31181014 gttttttggttttgcttcttttgataaggaccggagggagtatgattttaacagcttttttt-atccaatatcatgataccatcggtttctgctttgata 31180916  T
Q  218 tttaccgggtttcccatcctgaaaattatctgcatgtgtacagcttcgaagaaaaggaatcgtgcaaaatgattttagagaagattgggctgacaggtta 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180915 tttaccgggtttcccatcctgaaaattatctgcatgtgtgcagcttcgaagaaaaggaatcgtgcaaaatgattttagagaagattgggctgacaggtta 31180816  T
Q  318 tcaggtagaactggaattctattgaatttaatttgttactaccatctaatatttnnnnnnnnnnnnnnttgttatcctttaacattaaacttgctgtcgt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||    
T  31180815 tcaggtagaactggaattctattgaatttaatttgttactaccatctaatatttaaaaaaattaaaaattgttatcctttaacattaaacttgctgtcgt 31180716  T
Q  418 ttagattctgctgttgtggtattttcgtaaatctttttctggttcttacacatttgttggggcatgtaaactgctcatgctgaaaaatgtgtgttctaac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180715 ttagattctgctgttgtggtattttcgtaaatctttttctggttcttacacatttgttggggcatgtaaactgctcatgctgaaaaatgtgtgttctaac 31180616  T
Q  518 tcacatatgttaaccgaaactctttttagcaagatgctcttgtatgctgaaccgaacttttcataatcgtgttaagttaattttccagatggggcaaacg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180615 tcacatatgttaaccgaaactctttttagcaagatgctcttgtatgctgaaccgaacttttcataatcgtgttaagttaattttccagatggggcaaacg 31180516  T
Q  618 aaaatattcctaagagctggtcatatggcagaattggatgctcggagagcatacatgcttagcaactctgcaacaattatccaaaagcatactagaactc 717  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180515 aaaatattcctaagagctggtcatatggcagaattggatgctctgagagcatacatgcttagcaactctgcaacaattatccaaaagcatactagaactc 31180416  T
Q  718 attttagtcggaaaacatatactacactgcggatgtcc 755  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  31180415 attttagtcggaaaacatatactacactgcggaagtcc 31180378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 755
Target Start/End: Complemental strand, 31003647 - 31002904
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatgattaatgattgcattggttttgat 117  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31003647 aatattagcgaatgtatttaatgtttaacaattttctataaaggtatatttgtaaaaatattcaaaaagttacatgattaatgattgcattggttttgat 31003548  T
Q  118 gttttttggttttgcttcttttgataaggaccggagggagtatgatttt--aacagcnnnnnnnn--atccaatatcatgataccatcggtttctgcttt 213  Q
    ||||||||||||| |||||| | ||||||||| ||||| ||||||||||  | | ||          |||||||||||||| |  || ||||||||||||    
T  31003547 gttttttggtttttcttcttataataaggacctgagggggtatgattttttagccgctttttttttaatccaatatcatgaca--attggtttctgcttt 31003450  T
Q  214 gatatttaccgggtttcccatcctgaaaattatctgcatgtgtacagcttcgaagaaaaggaatcgtgcaaaatgattttagagaagattgggctgacag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31003449 gatatttaccgggtttcccatcctgaaaattatctgcatgtgtgcagcttcgaagaaaaggaatcgtgtaaaatgattttagagaagattgggctgacag 31003350  T
Q  314 gttatcaggtagaactggaattctattgaatttaatttgttactaccatctaatatttnnnnnnnnnnnnnnttg--ttatcctttaacattaaacttgc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |    ||||||| |||||||||||||||    
T  31003349 gttatcaggtagaactggaattctattgaatttaatttgttactaccatctaatatttaaaaaatatatatatatatttatcctgtaacattaaacttgc 31003250  T
Q  412 tgtcgtttagattctgctgttgtg-gtattttcgtaaat-ctttttctggttcttacacatttgttg-gggcatgtaaactgctcatgctgaaaaatgtg 508  Q
    |||||||||||||||||||||||  ||||||| |||||  |    ||||||||||| ||||||||   ||||||||||||||||||||||||||||||||    
T  31003249 tgtcgtttagattctgctgttgttagtattttggtaaaaacaaaatctggttcttaaacatttgtaaagggcatgtaaactgctcatgctgaaaaatgtg 31003150  T
Q  509 tgttct-aactcacatatgttaaccgaaactctttttagcaagatgctcttgtatgctgaaccgaactttt-cataatcgtgttaagttaattttccaga 606  Q
    |||||| |||||||||||    ||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||    
T  31003149 tgttcttaactcacatatt---accaaaactctttttagcaagatgctcttgtatggtgaactgaactttttcataatcgtgttaaattaattttccaga 31003053  T
Q  607 tggggcaaacgaaaatattcctaagagctggtcatatggcagaattggatgctcggagagcatacatgcttagcaactctgcaacaattatccaaaagca 706  Q
    | |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31003052 tagggcaaacaaaattattcctaagagctggtcatatggcagaattggatgctcggagagcatacatgcttagcaactctgcaacaattatccaaaagca 31002953  T
Q  707 tactagaactcattttagtcggaaaacatatactacactgcggatgtcc 755  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  31002952 tactagaactcattttagtcagaaaagatatactacactgcggaagtcc 31002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 28165176 - 28165051
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||  || ||| ||||||| ||||||||| |||||| ||||||    
T  28165176 tgtatttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaattacaataattgatgattgtattggttttaatgtttcttggtt 28165077  T
Q  129 ttgcttcttttgataaggaccggagggag 157  Q
    |   ||||| | |||||||||||||||||    
T  28165076 t---ttcttataataaggaccggagggag 28165051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 42745640 - 42745769
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatgttttttggtt 128  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||  |  ||||||||| |||||||||||||||||||||||||    
T  42745640 tgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacgacaattaatgatagcattggttttgatgttttttggtt 42745739  T
Q  129 ttgcttcttttgataaggaccggagggagta 159  Q
    || |||||| | | ||||||| |||||||||    
T  42745740 tttcttcttataacaaggacc-gagggagta 42745769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 11435681 - 11435773
Alignment:
Q  68 tgtaaaaatattcaaaaagttatatgat-taatgattgcattggttttgatgttttttggttttgcttcttttgataaggaccggagggagta 159  Q
    ||||||||||| |||||||||| |  || ||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||    
T  11435681 tgtaaaaatatgcaaaaagttacactatataatgattgcattggttttgatgttttttggtttttcttcttataataagtaccggagggagta 11435773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 36437250 - 36437116
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatg---ttttttg 125  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||  |  ||||||| | |||||||||||||||   ||||||     
T  36437250 tgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaatgctggcattggttttgatggttttttttt 36437151  T
Q  126 gttttgcttcttttgataaggaccggagggagtat 160  Q
     |||| |||||| |  |||||||||||||||||||    
T  36437150 ttttttcttcttatattaaggaccggagggagtat 36437116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 9851876 - 9851733
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatat-----gattaatgattgcattggtt 112  Q
    |||||||| | || |||||||||||||||| | || ||||| |||||||||||||||||||||||||||||| ||      || ||||| |||||||||     
T  9851876 aatattagtgggtatatttaatgtttcacagtattttataaaggtatatttgtaaaaatattcaaaaagttacattaatatatcaatgaatgcattggta 9851777  T
Q  113 ttgatgttttttggttttgcttcttttgataaggaccggaggga 156  Q
    ||||||||||||| ||||| | ||| | ||||||| ||||||||    
T  9851776 ttgatgttttttgattttgttgcttataataaggatcggaggga 9851733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 31152520 - 31152637
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatg-attaatgattgcattggttttga 116  Q
    |||||||| ||  ||||||||||||||||| ||||  || || ||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||    
T  31152520 aatattagtgaacgtatttaatgtttcacattttt--atgagcgtatatttgtaaaaatattcaaaaagttacatgaattattaattgcattggttttga 31152617  T
Q  117 tgttttttggttttgcttctt 137  Q
    |  |||||||||||| |||||    
T  31152618 t-atttttggttttgtttctt 31152637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 42454935 - 42454868
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaa 85  Q
    |||||||| |||||||||||||| |||| |||||| ||| ||||||||||| ||||||||||||||||    
T  42454935 aatattagtgagtgtatttaatgcttcataattttttatgagggtatatttataaaaatattcaaaaa 42454868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 17988205 - 17988076
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||||||||||||||||  ||| ||| ||||||||||||| ||||  |||||||||| | ||||||||||   ||||||||||| ||||||  ||    
T  17988205 tgtatttaatgtttcacaatttattatgaggatatatttgtaaaattattttaaaagttatatttattaatgattatcttggttttgat-tttttttatt 17988107  T
Q  129 ttgcttcttttgataaggaccggagggagta 159  Q
    ||| ||||| | |||||||  ||||||||||    
T  17988106 ttgtttcttataataaggattggagggagta 17988076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 28470029 - 28470152
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatgatt-aatgattgcattggttttgatgttttttggt 127  Q
    |||||||||||||||||||||||| ||| || |||| |     |||||||||||||||||  || | | ||||| ||||||||||||||| |||||||||    
T  28470029 gtgtatttaatgtttcacaattttttatgagagtatgt-----aaaatattcaaaaagttgcattaatcaatgaatgcattggttttgatattttttggt 28470123  T
Q  128 tttgcttcttttgataaggaccggaggga 156  Q
    |||| | ||| | |||| |||||||||||    
T  28470124 tttgttgcttataataaagaccggaggga 28470152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 24547737 - 24547856
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatgattaatgattgcattggttttgat 117  Q
    |||||||| || ||||||||||  ||||||| |||||||| || ||||||||||||| |||| |||||||  ||  ||||||||||| ||| |||||  |    
T  24547737 aatattagtgaatgtatttaatcgttcacaactttctatagggatatatttgtaaaattatttaaaaagtggtaaaattaatgattgtattagtttttgt 24547836  T
Q  118 gttttttggttttgcttctt 137  Q
    |||||||  |||| ||||||    
T  24547837 gtttttttatttttcttctt 24547856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 46443798 - 46443894
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattc-aaaaagttata-tgattaatgattgcattgg-ttttgatgtttttt 124  Q
    ||||| ||||||||||||||||| |||  |||||||||||||||||||||| ||||| ||||| | ||| ||||||| ||||| ||||||||||||||    
T  46443798 tgtatataatgtttcacaatttt-tatgtgggtatatttgtaaaaatattcaaaaaaattatattaatttatgattgtattggtttttgatgtttttt 46443894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 948203 - 948107
Alignment:
Q  30 tgtatttaatgtttcacaa-ttttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgtttttt 124  Q
    ||||||||||||||| ||| |||| ||| |||||||||||| ||||||||| |||||||| || | |||||| |||| ||| ||||| |||||||||    
T  948203 tgtatttaatgtttcgcaaattttttatcagggtatatttgaaaaaatatttaaaaagttttattaattaataattgtattagttttcatgtttttt 948107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 25130217 - 25130265
Alignment:
Q  37 aatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaa 85  Q
    |||||||||||||||||||| | ||||||||||||||| ||||||||||    
T  25130217 aatgtttcacaattttctatgatggtatatttgtaaaagtattcaaaaa 25130265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 3574825 - 3574880
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaa 85  Q
    |||||||||| |||||||||||| |||||| |||||||| |||||| |||||||||    
T  3574825 tgtatttaatatttcacaattttttataagagtatatttataaaaacattcaaaaa 3574880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 32800402 - 32800525
Alignment:
Q  27 gagtgtatttaatgtttcacaattttctataagggtata--tttgtaaaaatattcaaaaagttatatgattaatgattgcattggttttgatg-ttttt 123  Q
    |||| |||||||| |||||||| ||||||| || | |||  |||||||||| ||||||||||| | |  ||||||| ||  |||| |||||||| |||||    
T  32800402 gagtatatttaatatttcacaaatttctatgagtggatacatttgtaaaaacattcaaaaagtgaaacaattaatgcttctattgattttgatgtttttt 32800501  T
Q  124 tggttttgcttcttttgataagga 147  Q
    ||||||| |||||| | |||||||    
T  32800502 tggtttttcttcttataataagga 32800525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 25381458 - 25381403
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaa 84  Q
    ||||||||||||||||||||| ||||||||   ||||| |||||| ||||||||||    
T  25381458 gtgtatttaatgtttcacaatgttctataacaatatatctgtaaagatattcaaaa 25381403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 26072963 - 26073049
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatg-attaatgattgcattggttttga 116  Q
    |||||||||||||| |||||||||||| |  | |||||| |||||||||| ||||| ||| | | ||||||||||| |||||||||||    
T  26072963 tgtatttaatgtttgacaattttctatcaaagaatatttttaaaaatatt-aaaaaattacaagtattaatgattgtattggttttga 26073049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 45691640 - 45691597
Alignment:
Q  42 ttcacaattttctataagggtatatttgtaaaaatattcaaaaa 85  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||    
T  45691640 ttcacaaatttttatgagggtatatttgtaaaaatattcaaaaa 45691597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 22516280 - 22516219
Alignment:
Q  99 tgattgcattggttttgatgttttttggttttgcttcttttgataaggaccggagggagtat 160  Q
    |||||||||||||||||||||||||| |||||| || || | ||||  | ||||||||||||    
T  22516280 tgattgcattggttttgatgtttttttgttttgttttttataataaatatcggagggagtat 22516219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 39150243 - 39150187
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaa 75  Q
    |||||||  |||||||||||||| ||||||| ||| ||| ||||||||||||||||||    
T  39150243 aatattaatgagtgtatttaatgcttcacaacttt-tatgagggtatatttgtaaaaa 39150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 18838836 - 18838977
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaat-attcaaaaagttata-tgattaatgattgcattggttttg 115  Q
    |||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||| | |||||||||| |||||||||||    
T  18838836 aatattagtgggtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaataattcaaaaatttatattaattaatgattacattggttttg 18838935  T
Q  116 atgttttttggttttgcttcttttgataaggaccggagggag 157  Q
    |||||||||||||||  ||||| | |||||||||||||||||    
T  18838936 atgttttttggttttatttcttataataaggaccggagggag 18838977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 31707375 - 31707273
Alignment:
Q  58 agggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggttttgcttcttttgataaggaccggaggga 156  Q
    |||||||||||||||||||||||||||||||| | | |||||||| || |||||||||| |||||||||||||| |||||| |  |||||||| ||||||    
T  31707375 agggtatatttgtaaaaatattcaaaaagttacactaattaatgagtgtattggttttgttgttttttggtttttcttcttatattaaggaccagaggga 31707276  T
Q  157 gta 159  Q
    |||    
T  31707275 gta 31707273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 47231635 - 47231526
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatga-ttaatgattgcattggttttga 116  Q
    ||||||| | ||||||||||||| ||||||| ||| ||| ||| |||| ||||||||||||||||||||||| || | ||||||||| |||||||||| |    
T  47231635 aatattaacaagtgtatttaatgattcacaactttttatgagg-tataattgtaaaaatattcaaaaagttacattaattaatgattccattggttttca 47231537  T
Q  117 tgttttttggt 127  Q
    |||||||||||    
T  47231536 tgttttttggt 47231526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 16572346 - 16572441
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatga-ttaatgattgcattggttttgatgtttttt 124  Q
    |||||||||| ||||||||| |||||||| ||||||||| ||||||| || ||||||||| |  | |||| ||| |||||||||||||||||||||    
T  16572346 tgtatttaatatttcacaatattctataatggtatatttttaaaaatgtttaaaaagttacaacaattaacgatagcattggttttgatgtttttt 16572441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 32599809 - 32599689
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||||| ||||||||||| ||| | ||||||||| ||||| |||| |||||||| || | |||||||| || |||| |||||| ||||||| |||    
T  32599809 tgtatttaatgcttcacaattttttatgaaggtatatttataaaattatt-aaaaagttttactaattaatgaatgtattgattttgaagtttttttgtt 32599711  T
Q  129 ttgcttcttttgataaggaccg 150  Q
    || |||||| | ||||||||||    
T  32599710 tttcttcttataataaggaccg 32599689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 4960543 - 4960610
Alignment:
Q  21 attagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtt 88  Q
    ||||| || ||||||||||||||||||| ||||||||| | ||||||||||||||||||  |||||||    
T  4960543 attagtgattgtatttaatgtttcacaactttctataaagatatatttgtaaaaatattttaaaagtt 4960610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 27032235 - 27032293
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta 89  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  27032235 tgtatttaatatttcacaactttctataagggtatatttgt-aaaatatttaaaaagtta 27032293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 30615213 - 30615272
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta 89  Q
    |||||||||||||||| |||||| ||||| ||| |||||||||||||||| |||||||||    
T  30615213 tgtatttaatgtttcataattttttataaaggtgtatttgtaaaaatatttaaaaagtta 30615272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 33721663 - 33721601
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata 91  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||| |||| |||||||||||    
T  33721663 gtgtatttaatgtttcacaattttttatgagagtatgtttgtaaaattattgaaaaagttata 33721601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 42312450 - 42312399
Alignment:
Q  32 tatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaa 83  Q
    ||||| ||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  42312450 tattttatgcttcacaattttttatgagggtatatttgtaaaaatattcaaa 42312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 2632485 - 2632543
Alignment:
Q  33 atttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata 91  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||| | |||||||||    
T  2632485 atttaatgtttcacaattttttataagaagatatttgtaaaaatatttataaagttata 2632543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 44720634 - 44720540
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgtttt 122  Q
    |||||||||||||||  ||||||| ||| ||| ||||||| ||||||||||||||| |||| | | || |||||||| |||| ||||||| ||||    
T  44720634 gtgtatttaatgttttgcaattttttatgaggatatatttataaaaatattcaaaatgttacattaatcaatgattgtattgattttgatatttt 44720540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 27184327 - 27184196
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatga-ttaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||||  ||||||| |||  || | ||| ||||| |||| ||||||||||||||  || | ||||||| |||||| |||||||||||||||  ||    
T  27184327 tgtatttaatacttcacaaattttaatgatggtttatttttaaagatattcaaaaagttggattaattaatgactgcattagttttgatgtttttttatt 27184228  T
Q  129 ttgcttcttttgataaggaccggagggagtat 160  Q
    || |||||| | ||||| | | ||||||||||    
T  27184227 tttcttcttataataagtatccgagggagtat 27184196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 34320853 - 34320924
Alignment:
Q  67 ttgtaaaaatattcaaaaagttatatga-ttaatgattgcattggttttgatgttttttggttttgcttctt 137  Q
    ||||||| |||||||||| |||| || | ||||||| |||||||||||| || ||||||||||||| |||||    
T  34320853 ttgtaaagatattcaaaaggttacattaattaatgaatgcattggtttttattttttttggttttgtttctt 34320924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 53325135 - 53325181
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaat 76  Q
    |||||||||||||| ||||||||||||||   |||||||||||||||    
T  53325135 tgtatttaatgttttacaattttctataaatatatatttgtaaaaat 53325181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 6087944 - 6087883
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata 91  Q
    |||||||||| ||||||||||||||||    ||||||| || |||| |||||||||||||||    
T  6087944 tgtatttaatatttcacaattttctatggaagtatattggttaaaacattcaaaaagttata 6087883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 8251321 - 8251464
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttga 116  Q
    |||||||| |||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||  || | | |||||||| || |||||||||||    
T  8251321 aatattagtgagtttatttaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaaaactacactaattaatgagtgtattggttttga 8251420  T
Q  117 tgttttttggttttgcttcttttgataaggaccggagggagtat 160  Q
    |||||||||||||| |||||  | ||||||||||||||||||||    
T  8251421 tgttttttggtttttcttctcataataaggaccggagggagtat 8251464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 16890331 - 16890224
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttga 116  Q
    |||||||| |||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | |||| | || ||||| |||||||    
T  16890331 aatattagtgagtttatttaatgtttcacaattttttatgagggtatatttgtaaaaatattcaaaaagttacattaattattaatggcattagttttga 16890232  T
Q  117 tgtttttt 124  Q
    ||||||||    
T  16890231 tgtttttt 16890224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 2152406 - 2152477
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta 89  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  2152406 aatattagcgagtctatttaatgcttcacaattttttataagggtatatttataaaaatattcaaaaagtta 2152477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 2207867 - 2207975
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| | | | |||||| || | ||||||||||||||||| ||    
T  2207867 gtgtatttaatgcttcacaatttt-tatgagggtatatttgtaaaaatattcaaaaagttacactaaataatgagtgtaatggttttgatgtttttttgt 2207965  T
Q  128 tttgcttctt 137  Q
    ||| ||||||    
T  2207966 tttacttctt 2207975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 1445439 - 1445581
Alignment:
Q  19 atattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgat 117  Q
    ||||||| ||||||||||||||||||||||||||  || | ||||||||||||||| |||||||||| ||| | | || ||||| ||||||| |||||||    
T  1445439 atattagtgagtgtatttaatgtttcacaatttttaatgaaggtatatttgtaaaagtattcaaaaaattacattaatcaatgaatgcattgattttgat 1445538  T
Q  118 g-ttttttggttttgcttcttttgataaggaccggagggagta 159  Q
    | ||||||| ||||| | ||| | |||||| || |||||||||    
T  1445539 gattttttgtttttgttgcttataataaggtcccgagggagta 1445581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 2520196 - 2520098
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttg 115  Q
    |||||||  ||| |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| | | |||||||| || ||||||||||    
T  2520196 aatattattgagagtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaagttacattaattaatgaatgtattggttttg 2520098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 30653683 - 30653621
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata 91  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||    
T  30653683 gtgtatttaatgtttcacaaatttttatgagggtatatttgtaaaattattcaaaaagttata 30653621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 40314312 - 40314419
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggtt 128  Q
    |||||||||||||||| |||||| ||| | | |||||||||||||||||| |||| |||| | | |||||  ||| |||||||||||||| |||||||||    
T  40314312 tgtatttaatgtttcataattttttatgaagatatatttgtaaaaatatttaaaaggttacattaattaaaaattacattggttttgatg-tttttggtt 40314410  T
Q  129 ttgcttctt 137  Q
    ||| |||||    
T  40314411 ttgtttctt 40314419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 30870790 - 30870743
Alignment:
Q  32 tatttaatgtttcacaattttctataagggtatatttgtaaaaatatt 79  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  30870790 tatttaatgtttcacaattttttataagggtatatttgtcaaaatatt 30870743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 21504844 - 21504772
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataa-gggtatatttgtaaaaatattcaaaaagtta 89  Q
    ||||||| || ||| ||||||||| ||||||||||| |||| |||||||| |||||||| |||||||||||||    
T  21504844 aatattaccgggtgcatttaatgtctcacaattttccataaggggtatatgtgtaaaaacattcaaaaagtta 21504772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 31658950 - 31659044
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgtttttt 124  Q
    ||||||||||| | || |||||| ||| ||| |||||||||||||||||||||||| ||||| | |||||||| || |||| ||||||| ||||||    
T  31658950 tgtatttaatgctgcataatttt-tatgaggatatatttgtaaaaatattcaaaaaattatactaattaatgagtgtattgattttgatttttttt 31659044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 21794921 - 21795066
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttct-ataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttg 115  Q
    |||||||| | |||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||  | | || |||||||  ||||||||||    
T  21794921 aatattagtgtgtgtatttaatgtttcacaatttttttatgagggtatatttgtaaaaatattcaaaaagtttctttaatcaatgattatattggttttg 21795020  T
Q  116 atgttttttggttttgcttcttttgataaggaccggagggagtatg 161  Q
    |||||||||| ||||| ||||| | |||||||||||||||||||||    
T  21795021 atgttttttgattttgtttcttataataaggaccggagggagtatg 21795066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 3270012 - 3270140
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||  |||||||| |||||||||||||||||    
T  3270012 gtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaagttatactaattaatagttgcattgattttgatgttttttggt 3270111  T
Q  128 tttgcttcttttgataaggaccggaggga 156  Q
    ||| |||||| | |||||||||| |||||    
T  3270112 ttttcttcttataataaggaccgaaggga 3270140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 3268894 - 3269022
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||  |||||||| |||||||||||||||||    
T  3268894 gtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaagttatactaattaatagttgcattgattttgatgttttttggt 3268993  T
Q  128 tttgcttcttttgataaggaccggaggga 156  Q
    ||| ||| || | |||||||||| |||||    
T  3268994 ttttctttttataataaggaccgaaggga 3269022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 3269453 - 3269581
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||  |||||||| |||||||||||||||||    
T  3269453 gtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaagttatactaattaatagttgcattgattttgatgttttttggt 3269552  T
Q  128 tttgcttcttttgataaggaccggaggga 156  Q
    ||| ||| || | |||||||||| |||||    
T  3269553 ttttctttttataataaggaccgaaggga 3269581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 38214209 - 38214329
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaag-ttatatgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| || | | || |||||||| ||||||||||||||||||||||    
T  38214209 gtgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaagtttctttaatcaatgattgtattggttttgatgttttttggt 38214308  T
Q  128 tttgcttcttttgataaggac 148  Q
    |||| ||||| | ||||||||    
T  38214309 tttgtttcttataataaggac 38214329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 38496569 - 38496701
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||||||||| ||  ||| ||| |||||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||||||||    
T  38496569 gtgtatttaatgtttcgcacatttttatcagggtatatttgtaaaaatattcaaaaagttacactaattaatgatagcattggttttgatgttttttggt 38496668  T
Q  128 tttgcttcttttgataaggaccggagggagtat 160  Q
    ||| ||  || | || |||||||||||||||||    
T  38496669 ttttctatttataatgaggaccggagggagtat 38496701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 40664331 - 40664451
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaag-ttatatgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||||| || | | ||||||||||| ||||||||||||||||||||||    
T  40664331 gtgtatttaatgtttcacaattttttacgagggtatatttgtaagaatattcaaaaagtttctttaattaatgattgtattggttttgatgttttttggt 40664430  T
Q  128 tttgcttcttttgataaggac 148  Q
    |||| ||||| | ||||||||    
T  40664431 tttgtttcttataataaggac 40664451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 16781357 - 16781489
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||||||||||| |||||  || |||||||||||||| || |||||||||| ||| | | |||||||||| |||||||||||||||| ||||||    
T  16781357 gtgtatttaatgtttcaccatttttaatgagggtatatttgtataattattcaaaaaattagactaattaatgattacattggttttgatgttatttggt 16781456  T
Q  128 tttgcttcttttgataaggaccggagggagtat 160  Q
    ||| |||||| |  |||||||||||||||||||    
T  16781457 ttttcttcttatattaaggaccggagggagtat 16781489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 21229606 - 21229710
Alignment:
Q  56 taagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggttttgcttcttttgataaggaccggagg 154  Q
    |||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||||| ||| ||||||||||| |||||| | |||||||||||| |    
T  21229606 taagcgtatatttgtaaaaatattcaaaaagttacaataattaatgattgcattggttttaatgatttttggtttttcttcttataataaggaccggatg 21229705  T
Q  155 gagta 159  Q
    |||||    
T  21229706 gagta 21229710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 39063657 - 39063543
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaag-ttatatgattaatgattgcattgg-ttttg 115  Q
    |||||||| | |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| || | | || |||||||| ||||| ||||     
T  39063657 aatattagtgtgtgtatttaatgtttcacaattttttatgaggttatatttgtaaaaatattcaaaaagtttctttaatcaatgattgtattggttttta 39063558  T
Q  116 atgttttttggtttt 130  Q
    |||||||||||||||    
T  39063557 atgttttttggtttt 39063543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 40442818 - 40442933
Alignment:
Q  33 atttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggttttg 131  Q
    |||||||| ||||||| ||| ||||||||||||| | |||||||||||||||  ||||| | |||||||||| ||||| ||||||||||||| ||||||     
T  40442818 atttaatgcttcacaactttttataagggtatatctataaaaatattcaaaagattatactaattaatgattacattgattttgatgtttttcggttttt 40442917  T
Q  132 cttcttttgataagga 147  Q
    |||||| | |||||||    
T  40442918 cttcttataataagga 40442933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 40503975 - 40504091
Alignment:
Q  33 atttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggttttg 131  Q
    |||||||| ||||||| ||| ||| ||||||||| |||||||||||||||||  ||| | | |||||||||| ||||| ||||||||||||| ||||||     
T  40503975 atttaatgcttcacaactttttatgagggtatatctgtaaaaatattcaaaagattacactaattaatgattacattgattttgatgtttttcggttttt 40504074  T
Q  132 cttcttttgataaggac 148  Q
    |||||| | ||||||||    
T  40504075 cttcttataataaggac 40504091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 2761616 - 2761729
Alignment:
Q  38 atgtttcacaattttctataagggtatat--ttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatg-ttttttggttttgct 133  Q
    ||||||||||||||| ||| ||| |||||  || |||||||||||||||||||| | | |||||||||||||| |||||| ||| ||||||||||||| |    
T  2761616 atgtttcacaattttttatgaggatatatatttataaaaatattcaaaaagttacactaattaatgattgcatcggttttaatgtttttttggttttgtt 2761715  T
Q  134 tcttttgataagga 147  Q
    |||| | |||||||    
T  2761716 tcttataataagga 2761729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 18423403 - 18423499
Alignment:
Q  31 gtatttaatgtttcacaattttctataagggtatatttgt--aaaaatattcaaaaagttat-atgattaatgattgcattggttttgatgtttttt 124  Q
    ||||||||||||||||||||||||| |||||||||| | |  ||||||||| |||||||||| ||  ||||| ||| ||||| ||||||||||||||    
T  18423403 gtatttaatgtttcacaattttctaaaagggtatatgtataaaaaaatatttaaaaagttataatagttaataattacattgattttgatgtttttt 18423499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 14200430 - 14200323
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttga 116  Q
    |||||||| |||| ||||||||  ||||||| ||| ||| |||||||||||||||||| ||||||||| |||  || | |||||||||  ||||||||||    
T  14200430 aatattagtgagtatatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaggataactaatgattgtcttggttttga 14200331  T
Q  117 tgtttttt 124  Q
    || |||||    
T  14200330 tgattttt 14200323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 19285965 - 19286072
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttat-atgattaatgattgcattggttttga 116  Q
    |||||||| || ||||||||||| ||||||| |||||||| || ||||||||||||| |||| |||||||| | |  |||||| |||| |||||||||      
T  19285965 aatattagtgaatgtatttaatggttcacaactttctatagggatatatttgtaaaattatttaaaaagttgtaacaattaataattgtattggtttttg 19286064  T
Q  117 tgtttttt 124  Q
    ||||||||    
T  19286065 tgtttttt 19286072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 28239202 - 28239287
Alignment:
Q  40 gtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtt-atatgattaatgattgcattggttttgatgtttttt 124  Q
    ||||||||||||||| || | ||||||||| || |||||||||||| || | || |||||||||| ||||| ||||||||||||||    
T  28239202 gtttcacaattttctgtacgagtatatttgaaataatattcaaaaaattaaaataattaatgattacattgattttgatgtttttt 28239287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 32872426 - 32872538
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttga 116  Q
    |||||||| | || ||||||||  ||||||||||| ||| |||||||||||||||||| ||||||||| |||  |  | |||||||||  ||||||||||    
T  32872426 aatattagtgggtatatttaatacttcacaattttttatgagggtatatttgtaaaaacattcaaaaaattacaaccactaatgattgtcttggttttga 32872525  T
Q  117 tgttttttggttt 129  Q
    || | ||||||||    
T  32872526 tgatctttggttt 32872538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 13027911 - 13027957
Alignment:
Q  42 ttcacaattttctataagggtatatttgtaaaaatattcaaaaagtt 88  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  13027911 ttcacaaatttctatgaggatatatttgtaaaaatattcaaaaagtt 13027957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 34309310 - 34309440
Alignment:
Q  31 gtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatgttttttggttt 129  Q
    |||||||||  ||||||| ||| ||| |||||||||||||||||  ||||||||| |||  || | |||||||||  ||| |||||||| ||||||||||    
T  34309310 gtatttaatacttcacaaatttttatgagggtatatttgtaaaagcattcaaaaaattacaatcactaatgattgtcttgattttgatgatttttggttt 34309409  T
Q  130 tgcttcttttgataaggaccggagggagtat 160  Q
       ||||| | | |||||||| |||||||||    
T  34309410 attttcttataaaaaggaccgaagggagtat 34309440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 31365092 - 31365036
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaag 86  Q
    |||||||||| ||||||||  ||||||||| |||||||||||||||| || ||||||    
T  31365092 tgtatttaatatttcacaacattctataagtgtatatttgtaaaaattttaaaaaag 31365036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 31405044 - 31405097
Alignment:
Q  32 tatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaa 85  Q
    ||||||||  |||| || ||||||| ||| ||||||||||||||||||||||||    
T  31405044 tatttaatacttcataaatttctatgaggatatatttgtaaaaatattcaaaaa 31405097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 44883218 - 44883181
Alignment:
Q  31 gtatttaatgtttcacaattttctataagggtatattt 68  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  44883218 gtatttaatgtttcacaactttttataagggtatattt 44883181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 45261448 - 45261588
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatgatt-aatgattgcattggttttga 116  Q
    |||||||| | |||||||||||||||||||||||| |   ||||||||||||||||||| |||||||||||| || | | ||||| ||||||||||||||    
T  45261448 aatattagtgggtgtatttaatgtttcacaattttttg--agggtatatttgtaaaaatgttcaaaaagttacattaatcaatgaatgcattggttttga 45261545  T
Q  117 tgttttttggttttgcttcttttgataaggaccggagggagta 159  Q
    ||||||||||||||| | ||| | |||||||||||||||||||    
T  45261546 tgttttttggttttgttgcttataataaggaccggagggagta 45261588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 36659278 - 36659407
Alignment:
Q  27 gagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttg 125  Q
    ||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| | | ||||| ||||| |||| |||||||||||||      
T  36659278 gagtgtatttaatgtttcataattttttattagggtatacttgtaaaaatattcaaaaagttacattaattaacgattgtattgattttgatgtttttaa 36659377  T
Q  126 gttttgcttcttttgataaggaccggaggg 155  Q
    |||||| ||||| | |||||||||||||||    
T  36659378 gttttgtttcttataataaggaccggaggg 36659407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 43320188 - 43320056
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatg-attaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||||| ||| | ||||| ||||||||| |||||||||||||||||||||||||| |   |||||| ||| |||| |||||||||||||||||||    
T  43320188 tgtatttaatgcttcgcgattttttataagggtgtatttgtaaaaatattcaaaaagttagacatattaattattacattagttttgatgttttttggtt 43320089  T
Q  129 ttgcttcttttgataaggaccggagggagtatg 161  Q
    || |||||| | |||||||||||| ||||||||    
T  43320088 tttcttcttataataaggaccggaaggagtatg 43320056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 35455391 - 35455531
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttga 116  Q
    |||||||| |||||||||||||||||||||||||| ||| ||  |||||||||| ||||||||||||||||| | | || ||| | ||||||||||||||    
T  35455391 aatattagtgagtgtatttaatgtttcacaattttttatgag--tatatttgtagaaatattcaaaaagttactttaatcaataaatgcattggttttga 35455488  T
Q  117 tgttttttggttttgcttcttttgataaggaccggagggagta 159  Q
    |||||||| |||||| | ||| | ||||||||||||| |||||    
T  35455489 tgttttttagttttgttgcttataataaggaccggagtgagta 35455531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 40344982 - 40344855
Alignment:
Q  31 gtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtt-atatgattaatgattgcattggttttgatgttttttggttt 129  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||   || || ||||| ||||||||||||||||||||||  ||     
T  40344982 gtatttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaaagttgcaataatcaatgactgcattggttttgatgtttttt--tta 40344885  T
Q  130 tgcttcttttgataaggaccggagggagta 159  Q
    |  ||||| | |||||||||||||||||||    
T  40344884 tttttcttataataaggaccggagggagta 40344855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 46918514 - 46918384
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatgttttttggtt 128  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| || ||||| |||  |  ||||||| | |||||||||||||||||||||| ||    
T  46918514 tgtatttaatgtttcaaaatattctataagggtatatttgtaaaaatgtttaaaaatttacaacaattaatgttggcattggttttgatgttttttgatt 46918415  T
Q  129 ttgcttcttttgataaggaccggagggagta 159  Q
    ||  ||||| |  ||||||||||||||||||    
T  46918414 ttttttcttatattaaggaccggagggagta 46918384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 25294904 - 25294777
Alignment:
Q  35 ttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatga-ttaatgattgcattggttttgatgttttttggttttgct 133  Q
    |||||||||||||||||| ||| || |||| ||| |||||||||| ||| ||||  || | |||||||||| |||||| ||||||||||||||||||| |    
T  25294904 ttaatgtttcacaattttttatgagagtatgtttataaaaatatttaaatagtttcattaattaatgattgtattggtattgatgttttttggttttgtt 25294805  T
Q  134 tcttttgataaggaccggagggagtatg 161  Q
    |||| | |||||||||||||||| ||||    
T  25294804 tcttataataaggaccggagggaatatg 25294777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 17003639 - 17003533
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttga 116  Q
    |||||||| | |||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | || ||||| |||||| || ||||    
T  17003639 aatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatatttgtaaaaatattcaaaaagttacattaatcaatgaatgcattagtattga 17003541  T
Q  117 tgtttttt 124  Q
    ||||||||    
T  17003540 tgtttttt 17003533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 8825422 - 8825352
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtt 88  Q
    |||||||  |||||||||||||| | ||||||||| ||||||||||||||| |||||||||| ||||||||    
T  8825422 aatattaatgagtgtatttaatgctacacaattttttataagggtatatttataaaaatatttaaaaagtt 8825352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 28695646 - 28695770
Alignment:
Q  35 ttaatgtttcacaattttctataagggt--atatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggttttg 131  Q
    |||||||||||||| ||| |||||| ||  ||||||||||||||||||||||||||| | | ||||||||||  |||||||| |||| |||||  ||||     
T  28695646 ttaatgtttcacaactttttataagcgtgtatatttgtaaaaatattcaaaaagttacactaattaatgattatattggtttagatgatttttaattttt 28695745  T
Q  132 cttcttttgataaggaccggaggga 156  Q
    |||||| |  |||||||| ||||||    
T  28695746 cttcttatattaaggaccagaggga 28695770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 32211843 - 32211740
Alignment:
Q  59 gggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggttttgcttctttt--gataaggaccggaggg 155  Q
    |||| |||||||||||||||  ||||| ||| | | |||||||| |||||||||||||||||||||| ||||| |||||| |   |||||||||||||||    
T  32211843 gggtgtatttgtaaaaatataaaaaaaattacactaattaatgagtgcattggttttgatgtttttttgtttttcttcttatactataaggaccggaggg 32211744  T
Q  156 agta 159  Q
    ||||    
T  32211743 agta 32211740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 25286107 - 25286008
Alignment:
Q  39 tgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatgttttttggttttgcttctt 137  Q
    |||||||||||||||||||| | ||||||| |||||| ||| |||||||||  || ||||||||   | ||||||||||||||||||  |||| ||||||    
T  25286107 tgtttcacaattttctataaagatatatttataaaaacattaaaaaagttacaataattaatgacaactttggttttgatgtttttttatttttcttctt 25286008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 40729772 - 40729817
Alignment:
Q  32 tatttaatgtttcacaattttctataagggtatatttgtaaaaata 77  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||    
T  40729772 tatttaatgtttcataattttctataaagttatatttgtaaaaata 40729817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 42279285 - 42279228
Alignment:
Q  32 tatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta 89  Q
    |||||||| ||||| || ||| ||| |||||||||||||||||||||| |||||||||    
T  42279285 tatttaatatttcataaatttttatgagggtatatttgtaaaaatattaaaaaagtta 42279228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 20265918 - 20265824
Alignment:
Q  32 tatttaatgtttcacaattttctataagggtatatttgtaaa-aatattcaaaaagttatatga-ttaatgattgcattggttttgatgtttttt 124  Q
    ||||||| |||||| || ||| ||||||| |||||||||||  |||||| ||||||||| |  | |||||| ||| |||||||||||||||||||    
T  20265918 tatttaacgtttcataactttttataaggatatatttgtaagtaatatttaaaaagttacaaaagttaatggttgaattggttttgatgtttttt 20265824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 27828545 - 27828598
Alignment:
Q  32 tatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaa 85  Q
    |||||| | |||||||| ||| ||| | ||||||||||||||||||||||||||    
T  27828545 tatttagtatttcacaaatttttatgaaggtatatttgtaaaaatattcaaaaa 27828598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 18705095 - 18705227
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||| | | ||||||  ||| |||||||| |||||||||||||    
T  18705095 gtgtatttaatgcttcacaactttttataaggatatatttgtaaaaatattcaaaaagttacactaattaatagttgtattggtttcgatgttttttggt 18705194  T
Q  128 tttgcttcttttgataaggaccggagggagtat 160  Q
    ||| |||||| | |||||||||||||| |||||    
T  18705195 ttttcttcttataataaggaccggaggaagtat 18705227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 3629272 - 3629129
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttga 116  Q
    |||||||| || |||||||||||||||||||  |||||||||| ||||||||||||||| || |||||||||  |  |||||| ||  ||||||||||||    
T  3629272 aatattagtgaatgtatttaatgtttcacaacattctataaggttatatttgtaaaaatgtttaaaaagttacaacaattaattataacattggttttga 3629173  T
Q  117 tgttttttggttttgcttcttttgataaggaccggagggagtat 160  Q
    ||||||||||||||   |||| | ||| ||||||||||||||||    
T  3629172 tgttttttggttttttatcttataatagggaccggagggagtat 3629129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 11691118 - 11690987
Alignment:
Q  22 ttagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatat-gattaatgattgcattggttttgatgtt 120  Q
    |||| ||||||||||||| ||||| ||| || ||| ||| | |||||||||||||||||||||||||| ||  |||||| ||||||||  ||||||| ||    
T  11691118 ttagtgagtgtatttaatatttcataatattttatgaggatgtatttgtaaaaatattcaaaaagttaaatcaattaataattgcattaattttgatatt 11691019  T
Q  121 ttttggttttgcttcttttgataaggaccgga 152  Q
    ||||||||||  ||||| | ||||||||||||    
T  11691018 ttttggttttatttcttataataaggaccgga 11690987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 6688875 - 6688981
Alignment:
Q  19 atattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgat 117  Q
    |||||||  ||||||||||||| || |||||||| ||| ||||||||||||||| | ||| |||||||||| | | ||||||||||||||||||||| ||    
T  6688875 atattagtaagtgtatttaatgctttacaattttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattggttttaat 6688974  T
Q  118 gtttttt 124  Q
    |||||||    
T  6688975 gtttttt 6688981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 2225677 - 2225778
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||||||||||||| ||| ||| | ||||||||||||||||||||  |||||||| | | |||||| |||| ||| |||||||||||||||||||    
T  2225677 tgtatttaatgtttcacaactttttatgaaggtatatttgtaaaaatatttcaaaagttacactaattaataattgtattagttttgatgttttttggtt 2225776  T
Q  129 tt 130  Q
    ||    
T  2225777 tt 2225778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 29948130 - 29948023
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttga 116  Q
    |||||||  ||||||||||||||||| | |||||| ||| || ||||||||||||||||||  ||||||||| | | | |||||||||||||||||||||    
T  29948130 aatattaatgagtgtatttaatgttttataattttttattagagtatatttgtaaaaatatcaaaaaagttacattaaataatgattgcattggttttga 29948031  T
Q  117 tgtttttt 124  Q
    | ||||||    
T  29948030 tatttttt 29948023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 7735839 - 7735896
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaa 75  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  7735839 aatattagcgggtgtatttaatgtttgacaattttttataagggtatatttgtaaaaa 7735896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 11983632 - 11983542
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatgattaatgattgcattggttttgatgtttttt 124  Q
    ||||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||||     ||||| |||||||||||||| |||||||||    
T  11983632 tgtatttaatgtttcacaatttt-tacaagagtatatttgtaaaagtattcaaaaagtta---ccttaataattgcattggttttaatgtttttt 11983542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 35547112 - 35547008
Alignment:
Q  21 attagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttat-atgattaatgattgcattggttttgatgt 119  Q
    ||||| || |||||| || ||||||||| ||||||||| |||||||| ||||||||||| |||||||||| || ||||| ||||  ||| ||||||||||    
T  35547112 attagtgaatgtattaaaagtttcacaactttctataatggtatattcgtaaaaatatttaaaaagttataataattaacgattttattagttttgatgt 35547013  T
Q  120 ttttt 124  Q
    |||||    
T  35547012 ttttt 35547008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 73647 - 73740
Alignment:
Q  67 ttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggttttgcttcttttgataaggaccggagggagta 159  Q
    ||||||||||||| ||||||||| | | ||||||||||||| || |||||||| ||||||||||| |||||| | |||||||| ||| ||||||    
T  73647 ttgtaaaaatattaaaaaagttacactaattaatgattgcactgattttgatggtttttggtttttcttcttataataaggactggatggagta 73740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 11824562 - 11824636
Alignment:
Q  50 tttctataagggtatatttgtaaaaatattcaaaaagttatat-gattaatgattgcattggttttgatgttttt 123  Q
    ||||||||||| ||||||| |||||||||| ||||||||| ||  ||||||||||| |||| |||||||||||||    
T  11824562 tttctataaggatatatttataaaaatatttaaaaagttaaatcaattaatgattgtattgattttgatgttttt 11824636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 14417941 - 14418008
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaa 85  Q
    |||||||| | |||||||||||| ||||||||||| ||| | |||| |||||||| |||||| |||||    
T  14417941 aatattagtgggtgtatttaatgcttcacaattttttatgaaggtaaatttgtaagaatattaaaaaa 14418008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 36477907 - 36477852
Alignment:
Q  70 taaaaatattcaaaaagttatatga-ttaatgattgcattggttttgatgtttttt 124  Q
    |||||||||||||||||||| || | |||||||||||||||  |||||||||||||    
T  36477907 taaaaatattcaaaaagttacattaattaatgattgcattgaatttgatgtttttt 36477852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 14917819 - 14917877
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagt 87  Q
    |||||||||||  ||||||||||| ||  ||||||||||||||||||| || |||||||    
T  14917819 gtgtatttaattcttcacaattttttacgagggtatatttgtaaaaatgtttaaaaagt 14917877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 36482481 - 36482412
Alignment:
Q  20 tattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta 89  Q
    |||||| || ||||||||||||||||||| || |  ||| |||||||||||||||| | | |||||||||    
T  36482481 tattagtgaatgtatttaatgtttcacaacttccattaaaggtatatttgtaaaaaaaattaaaaagtta 36482412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 12143768 - 12143669
Alignment:
Q  32 tatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggtttt 130  Q
    ||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||||    
T  12143768 tatttaatgcttcacaattttttatgagggtgtatttgtaaaaatattcaaaaagttacattaattaatgattgcattggttttgatattttttggtttt 12143669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 180437 - 180567
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||| | |||| |||||| |||||||||||||||||||| ||||||||||||||| | | |||||||| || |||||||||||||||||||||||    
T  180437 tgtatttaacgcttcaaaattttttataagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattggttttgatgttttttggtt 180536  T
Q  129 ttgcttcttttgataaggaccggagggagta 159  Q
    || ||| || |  ||||||||||||| ||||    
T  180537 tttctttttatattaaggaccggaggtagta 180567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 7926890 - 7927033
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttga 116  Q
    |||||||  |||||||||||||| ||||||||||| ||| |||||||||||||||   |||||||||||||||| | |||||||  || |||||||||||    
T  7926890 aatattaaagagtgtatttaatgcttcacaattttttatgagggtatatttgtaatcttattcaaaaagttatactaattaatgtgtgtattggttttga 7926989  T
Q  117 tgttttttggtttt-gcttcttttgataaggaccggagggagta 159  Q
    |||||||| |||||   ||||| | |||| ||||||||||||||    
T  7926990 tgtttttttgttttattttcttataataaagaccggagggagta 7927033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 606668 - 606534
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgat----tgcattggttttgatgtttttt 124  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||  |  |||||||||    |  ||| |||||||||||||||    
T  606668 tgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaatgataacattaattagttttgatgtttttt 606569  T
Q  125 ggttttgcttcttttgataaggaccggagggagta 159  Q
    |||||| |||||| | ||||| ||| |||||||||    
T  606568 ggtttttcttcttataataagaaccagagggagta 606534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 31116418 - 31116476
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtt 88  Q
    |||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  31116418 tgtattgaatgtttcacaattctctataagggtatatttgtaaacatattcaaaaagtt 31116476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 5428787 - 5428900
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttga 116  Q
    |||||||| || || ||| ||||||||| || |||||| ||| ||||||||||||||||||| ||||| |||  |  ||||||||||||| |||||||||    
T  5428787 aatattagtgaatgcattcaatgtttcataactttctacaagagtatatttgtaaaaatatttaaaaaattacaacaattaatgattgcaatggttttga 5428886  T
Q  117 tgttttttggtttt 130  Q
    | ||||||||||||    
T  5428887 tattttttggtttt 5428900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 34837201 - 34837113
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgat 117  Q
    |||||| |||| ||||||||||| ||| |||||||||||||||||||||||||||||||| | | |||||||| || |||| |||||||    
T  34837201 tgtattgaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaaagttacactaattaatgagtgtattgattttgat 34837113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 31117343 - 31117401
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtt 88  Q
    |||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  31117343 tgtattgaatgtttcacaattctctataaaggtatatttgtaaacatattcaaaaagtt 31117401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 2950199 - 2950150
Alignment:
Q  35 ttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaa 85  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  2950199 ttaatgtttcacaatttt-tatcaggatatatttgtaaaaatattcaaaaa 2950150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 2972134 - 2972059
Alignment:
Q  41 tttcacaattttctataagggtatatttgtaaaaatattcaaaaagttat--atgattaatgattgcattggtttt 114  Q
    |||||||||||| |||||   ||| |||||||||||||||||| ||||||  |||||||||||||| |||| ||||    
T  2972134 tttcacaattttttataaaattatttttgtaaaaatattcaaatagttataaatgattaatgattgtattgttttt 2972059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 2443884 - 2444015
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatga-ttaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||||  ||||||| |||  || | ||| ||||| |||| ||||||||||||||  || | ||||||| |||||| |||||||||||||||  ||    
T  2443884 tgtatttaatacttcacaaattttaatgatggtttatttttaaagatattcaaaaagttggattaattaatgactgcattagttttgatgtttttttatt 2443983  T
Q  129 ttgcttcttttgataaggaccggagggagtat 160  Q
    || |||||| | ||||| | | ||||||||||    
T  2443984 tttcttcttataataagtatccgagggagtat 2444015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 1856849 - 1856942
Alignment:
Q  31 gtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgtttttt 124  Q
    ||||||||||||| ||| |||| ||| || ||||||||||||||||||| ||||| ||| | | |||||||||| | ||| ||||||| ||||||    
T  1856849 gtatttaatgttttaca-ttttgtatgagagtatatttgtaaaaatatttaaaaaattacattaattaatgatttcgttgattttgatatttttt 1856942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 41508185 - 41508327
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttga 116  Q
    |||||||| | |||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||||||||| | | |||||| | || |||||||| ||    
T  41508185 aatattagtgggtgtatttaatgcttcacaattttttatgagggtatatttgtaaaaacattcaaaaagttacactaattaataagtgtattggtttcga 41508284  T
Q  117 tgttttttggttttgcttcttttgataaggaccggagggagta 159  Q
    |||||||| ||||| |||||| | |||||||||| | ||||||    
T  41508285 tgttttttagtttttcttcttataataaggaccgaatggagta 41508327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 12485371 - 12485474
Alignment:
Q  28 agtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttgg 126  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||| | ||| |||||||||| | | ||||||||||||||||||||| |||||||||||    
T  12485371 agtgtatttattgtttcacaattttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattggttttaatgttttttgg 12485470  T
Q  127 tttt 130  Q
    ||||    
T  12485471 tttt 12485474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 12506803 - 12506906
Alignment:
Q  28 agtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttgg 126  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||| | ||| |||||||||| | | ||||||||||||||||||||| |||||||||||    
T  12506803 agtgtatttattgtttcacaattttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattggttttaatgttttttgg 12506902  T
Q  127 tttt 130  Q
    ||||    
T  12506903 tttt 12506906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 46341710 - 46341773
Alignment:
Q  96 taatgattgcattggttttgatgttttttggttttgcttcttttgataaggaccggagggagta 159  Q
    ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  46341710 taatgattgcattggttttgatgttttttggtttttcttcttataataaggaccggagggagta 46341773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 20949168 - 20949228
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta 89  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  20949168 gtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaaagtta 20949228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 45072569 - 45072438
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||||| |||||| |||| ||| || |||||||| |||||||||||||||| ||||| | |||||| | || |||||||||||||||| || |||    
T  45072569 tgtatttaatgcttcacagttttttatgagagtatatttataaaaatattcaaaaaattatactaattaatcagtgtattggttttgatgtttgtttgtt 45072470  T
Q  129 ttgcttcttttgataaggaccggagggagtat 160  Q
    || |||||| | |||| ||||| || ||||||    
T  45072469 tttcttcttataataaagaccgcagagagtat 45072438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 34470143 - 34470249
Alignment:
Q  18 aatattagcgagtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaag-ttatatgattaatgattgcattggttttga 116  Q
    |||||||| ||||||||||||| |||||||||||| ||   |  ||||||||||||||||||||||||| |||  | ||||||||||| |||| ||||||    
T  34470143 aatattagtgagtgtatttaatatttcacaattttgtaagtgtttatatttgtaaaaatattcaaaaagtttaattaattaatgattgtattgattttga 34470242  T
Q  117 tgttttt 123  Q
    | |||||    
T  34470243 tattttt 34470249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 6549120 - 6549065
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaa 85  Q
    ||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||    
T  6549120 tgtatttaatgtttcacaattttttattaaggtatattagtaaaaatattcaaaaa 6549065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 2195904 - 2196034
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatga-ttaatgattgcattggttttgatgttttttggtt 128  Q
    ||||||||||||||| || || |||| ||||| |||  ||||||| | || |||||||| ||  | ||||||||| ||||||||||||||||||||   |    
T  2195904 tgtatttaatgtttctcagttctctacaagggcatacatgtaaaagtgtttaaaaagttgtaatagttaatgattacattggttttgatgttttttttgt 2196003  T
Q  129 ttgcttcttttgataaggaccggagggagta 159  Q
    || ||| || | |||||||||||||||||||    
T  2196004 tttctttttataataaggaccggagggagta 2196034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 7307538 - 7307623
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggtttt 114  Q
    ||||||||||| ||||||||||| ||| || |||||||||||||||||| ||||| ||||   | |||||||||||||||| ||||    
T  7307538 tgtatttaatgcttcacaattttttatgagagtatatttgtaaaaatatgcaaaaggttaccctaattaatgattgcattgttttt 7307623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 46101205 - 46101117
Alignment:
Q  50 tttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatgttttttggttttgcttctt 137  Q
    |||||||||||||||||||||||||||||| |||||  ||  |  ||||||||||| ||| ||||| || |||||||||||| ||||||    
T  46101205 tttctataagggtatatttgtaaaaatatttaaaaaactacaacaattaatgattgtattagttttaatattttttggtttttcttctt 46101117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 18145872 - 18145933
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata 91  Q
    |||||||||| ||| |||| |||||||| |||||||||||||||| |||  |||||||||||    
T  18145872 tgtatttaatattttacaactttctatacgggtatatttgtaaaattatataaaaagttata 18145933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 20032576 - 20032486
Alignment:
Q  48 attttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatgttttttggttttgcttctt 137  Q
    ||||| |||||  ||||||||||||||||||| |||||||||  |  |||||||||||| || |||||||  |||||||| ||| ||||||    
T  20032576 attttttataatagtatatttgtaaaaatatttaaaaagttacaacaattaatgattgccttagttttgaaattttttgggttttcttctt 20032486  T

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Target: scaffold0836 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 3119 - 3250
Alignment:
Q  30 tgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttatatga-ttaatgattgcattggttttgatgttttttggtt 128  Q
    |||||||||||||||||||  ||||||||||| || ||||||||||| || |||||| || | || |||||||  | |||||||||||||||||||||||    
T  3119 tgtatttaatgtttcacaacattctataagggcatgtttgtaaaaatgtttaaaaaggtacaagaattaatgacagtattggttttgatgttttttggtt 3218  T
Q  129 ttgcttcttttgataaggaccggagggagtat 160  Q
    || |||||| | ||||||||||||||| ||||    
T  3219 tttcttcttataataaggaccggagggggtat 3250  T

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Target: scaffold0024 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 154436 - 154568
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggttttgatgttttttggt 127  Q
    |||||||||||| |||||| |||| ||| |||| || ||||||||||||||||| |||||| | | |||||||| || ||||||||||||||||||| ||    
T  154436 gtgtatttaatgcttcacagttttttatgagggcatgtttgtaaaaatattcaacaagttacactaattaatgagtgtattggttttgatgtttttttgt 154535  T
Q  128 tttgcttcttttgataaggaccggagggagtat 160  Q
    ||| ||| || | |||||||||||| |||||||    
T  154536 ttttctttttataataaggaccggaaggagtat 154568  T

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Target: scaffold1809 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 545 - 447
Alignment:
Q  33 atttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatgttttttggtttt 130  Q
    ||||||||||||||||  |||||||||||||||||||||||||| || |||||||||  |  ||||||||| | |||||| ||||||||||||| ||||    
T  545 atttaatgtttcacaacattctataagggtatatttgtaaaaatctttaaaaagttacaacaattaatgatggtattggtattgatgttttttgatttt 447  T

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Target: scaffold0088 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 51369 - 51453
Alignment:
Q  29 gtgtatttaatgtttcacaattttctataagggtatatttgtaaaaatattcaaaaagttata-tgattaatgattgcattggtt 112  Q
    |||||||||||||||||||| ||| ||| |||||||| |||||||||||||||||| |||| | | ||||||||||| |||||||    
T  51369 gtgtatttaatgtttcacaactttttatgagggtataattgtaaaaatattcaaaatgttacattaattaatgattgtattggtt 51453  T

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