View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7343_high_2 (Length: 460)

Name: NF7343_high_2
Description: NF7343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7343_high_2
NF7343_high_2
[»] chr7 (2 HSPs)
chr7 (106-446)||(32945092-32945435)
chr7 (19-110)||(32944939-32945030)
[»] chr1 (3 HSPs)
chr1 (342-450)||(18513819-18513933)
chr1 (380-425)||(23632193-23632238)
chr1 (388-424)||(9131711-9131747)
[»] chr3 (5 HSPs)
chr3 (326-423)||(18534451-18534548)
chr3 (336-420)||(18705557-18705641)
chr3 (345-416)||(30993274-30993347)
chr3 (336-425)||(3290606-3290697)
chr3 (343-425)||(3593054-3593137)
[»] chr5 (2 HSPs)
chr5 (345-425)||(39435986-39436066)
chr5 (383-419)||(39176465-39176501)
[»] chr4 (5 HSPs)
chr4 (342-425)||(19611950-19612033)
chr4 (342-427)||(25126262-25126346)
chr4 (342-427)||(15706662-15706749)
chr4 (314-393)||(15239969-15240049)
chr4 (342-421)||(14645733-14645810)
[»] chr2 (2 HSPs)
chr2 (350-394)||(20263760-20263804)
chr2 (371-425)||(27386966-27387020)
[»] scaffold0094 (1 HSPs)
scaffold0094 (342-425)||(48235-48319)
[»] chr8 (2 HSPs)
chr8 (336-447)||(17290598-17290715)
chr8 (336-415)||(40391350-40391429)
[»] chr6 (1 HSPs)
chr6 (349-425)||(9548741-9548820)
[»] scaffold0815 (1 HSPs)
scaffold0815 (319-393)||(1305-1379)
[»] scaffold0088 (1 HSPs)
scaffold0088 (342-425)||(35518-35603)
[»] scaffold0101 (1 HSPs)
scaffold0101 (336-393)||(555-610)
[»] scaffold0323 (1 HSPs)
scaffold0323 (332-417)||(16216-16303)
[»] scaffold0005 (1 HSPs)
scaffold0005 (342-421)||(171480-171557)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 106 - 446
Target Start/End: Original strand, 32945092 - 32945435
Alignment:
106 gaaaccgggcggcaaggcaacatcaagtaattgatttggattcgcacgacacagttatgattttccaacaattaaaactcaatttaacagctacgaattc 205  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
32945092 gaaacagggaggcaaggcaacatcaagtaattgatttggattcgcacgacacatttatgattttccaacaattaaaactcaatttaacagctacgaattc 32945191  T
206 ataaataatacgacaacaacaataagaagtaacacgcaggagtaataagattaaagtacacagcaagcaattagagcacaaa-tttaatttaaacataga 304  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
32945192 ataaacaatacgacaacaacaataagaagtaacacgcaggagtaataagattaaagtacacaacaagcaattagagcacaaattttaatttaaacataga 32945291  T
305 ttcatcaaataaggaaacaacaaaaaataacaacccgtcactacccatatgttcatacaaccttatgatgaatataactccccccttacctctagttttg 404  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32945292 ttcatcaaataaggaaacaacaaaaaataacaacctgtcactacccatatgttcatacaaccttatgatgaatataactccccccttacctctagttttg 32945391  T
405 cgaaattgatgatttcctacgtt--aatctatctaggttcttct 446  Q
    |||||||||||||||||||||||  ||||| |||| ||||||||    
32945392 cgaaattgatgatttcctacgttgaaatctctctaagttcttct 32945435  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 32944939 - 32945030
Alignment:
19 agaatatcacatgcaatttaaataaaatagacatggcaacaaggagctagcacggcaatatgaattgaatggaacaacaacgtgaaagaaac 110  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
32944939 agaatatcacatggaatttaaataaaatagacatggcaaccaggagcgagcacggcaatatgaattgaatggaacaacaacgtgaaagaaac 32945030  T

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Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 342 - 450
Target Start/End: Complemental strand, 18513933 - 18513819
Alignment:
342 tcactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttaa----tctatc 435  Q
    |||||||| |||||||||||||||| ||||| |||||| | ||| ||||||||||| ||||||||||||||||||||||||||| |||||    ||| ||    
18513933 tcactacctatatgttcatacaacccttatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctc 18513834  T
436 taggttcttctcact 450  Q
    |||||||||||||||    
18513833 taggttcttctcact 18513819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 425
Target Start/End: Complemental strand, 23632238 - 23632193
Alignment:
380 aactccccccttacctctagttttgcgaaattgatgatttcctacg 425  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||    
23632238 aactccccccttacctctagtttttcgaatttgatgagttcctacg 23632193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 9131747 - 9131711
Alignment:
388 ccttacctctagttttgcgaaattgatgatttcctac 424  Q
    ||||||||| |||||||||||||||||||||||||||    
9131747 ccttacctcgagttttgcgaaattgatgatttcctac 9131711  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 423
Target Start/End: Complemental strand, 18534548 - 18534451
Alignment:
326 aaaaaataacaacccgtcactacccatatgttcatacaa-ccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttccta 423  Q
    |||||| || ||||| |||||||| |||||||||||||| ||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||    
18534548 aaaaaaaaaaaacccttcactacc-atatgttcatacaatccttatggtgaatagagactccccc-ttacctctagttttgcgaaattgatgatttccta 18534451  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 420
Target Start/End: Complemental strand, 18705641 - 18705557
Alignment:
336 aacccgtcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttc 420  Q
    ||||| ||||||||| |||||||||||||||||||| | |||| | |||||||| | |||||||||||| ||||||||||||||||    
18705641 aacccttcactacccttatgttcatacaaccttatggtaaatagagactcccccat-acctctagttttacgaaattgatgatttc 18705557  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 416
Target Start/End: Complemental strand, 30993347 - 30993274
Alignment:
345 ctacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatga 416  Q
    |||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||| | ||| |||||||    
30993347 ctacccatatgttcatacaacccttatggtgaatagagactccccccttacctctagtttggagaatttgatga 30993274  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 425
Target Start/End: Original strand, 3290606 - 3290697
Alignment:
336 aacccgtcactacccatatgttcatacaacc----ttatgatgaatataactccccccttacctctagttttgcgaaattgatgatttcctacg 425  Q
    ||||| |||||| ||||||||||||||| ||    | ||||||||||  |||||||| |||| |||||||||||||||||||||||||||||||    
3290606 aacccttcactatccatatgttcatacagcccctatgatgatgaataagactccccc-ttac-tctagttttgcgaaattgatgatttcctacg 3290697  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 3593054 - 3593137
Alignment:
343 cactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 425  Q
    |||||| | |||| |||||||||| |||||||||||| | |||| |||||||||||||| |||||  ||||||||||||||||||    
3593054 cactacacgtatgatcatacaacccttatgatgaatagagactctccccttacctctag-tttgccgaattgatgatttcctacg 3593137  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 39436066 - 39435986
Alignment:
345 ctacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 425  Q
    |||||||||||||||||||  |||||| |||||| | |||||||| ||||||||||||||| ||||||||||||||||||||    
39436066 ctacccatatgttcatacagtcttatggtgaatagagactccccc-ttacctctagttttgtgaaattgatgatttcctacg 39435986  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 419
Target Start/End: Original strand, 39176465 - 39176501
Alignment:
383 tccccccttacctctagttttgcgaaattgatgattt 419  Q
    |||||| ||||||||||||||||||||||||||||||    
39176465 tcccccattacctctagttttgcgaaattgatgattt 39176501  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 425
Target Start/End: Complemental strand, 19612033 - 19611950
Alignment:
342 tcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 425  Q
    |||||||| |||||||||| |||||||||| |||||| | ||||||||| |||||||| ||||||||||||||||||| ||||||    
19612033 tcactacctatatgttcatgcaaccttatg-tgaatagagactccccccatacctctaattttgcgaaattgatgattccctacg 19611950  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 427
Target Start/End: Complemental strand, 25126346 - 25126262
Alignment:
342 tcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgtt 427  Q
    |||||||| ||||||| |||||||| |   ||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||    
25126346 tcactacctatatgtttatacaaccctt--atgaatagagactccccccatacctctagttttgcgaaattgatgatttcctacgtt 25126262  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 427
Target Start/End: Original strand, 15706662 - 15706749
Alignment:
342 tcactacccatatgttcatacaac-cttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgtt 427  Q
    ||||||| ||| || ||||||||| |||| | |||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||    
15706662 tcactactcatgtgatcatacaactcttacggtgaatagagactcccccattacctctagttttgcgaaattgatgatttcttacgtt 15706749  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 393
Target Start/End: Complemental strand, 15240049 - 15239969
Alignment:
314 taaggaaacaacaaaaaataacaacccgtcactacccatatgttcatacaacc-ttatgatgaatataactccccccttac 393  Q
    |||| |||||||| ||| ||||||||| ||||||| || |||  || |||||| |||||||||||| ||||||||||||||    
15240049 taagaaaacaacagaaattaacaacccttcactacacacatgagcacacaacccttatgatgaataaaactccccccttac 15239969  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 14645733 - 14645810
Alignment:
342 tcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcc 421  Q
    |||||||||| ||||||||||||||||||  |||||| | ||| ||||||||||||||||||| || ||||||||| ||||    
14645733 tcactacccagatgttcatacaaccttat-ttgaatagagact-cccccttacctctagttttccg-aattgatgacttcc 14645810  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 20263804 - 20263760
Alignment:
350 catatgttcatacaaccttatgatgaatataactccccccttacc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
20263804 catatgttcatacaaccttatgatgaatataactccccccttacc 20263760  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 27387020 - 27386966
Alignment:
371 gatgaatataactccccccttacctctagttttgcgaaattgatgatttcctacg 425  Q
    |||||||| ||| |||| ||||||||||||||||||||||| ||||||| |||||    
27387020 gatgaataaaacccccctcttacctctagttttgcgaaattaatgattttctacg 27386966  T

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Target: scaffold0094 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 425
Target Start/End: Original strand, 48235 - 48319
Alignment:
342 tcactacccatatgttcatacaa-ccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 425  Q
    |||||||||||||| |||||||| ||||||| |||||| | ||||||||||||||||||||||| || ||||||||| ||||||||    
48235 tcactacccatatgatcatacaatccttatggtgaatagagactccccccttacctctagttttccg-aattgatgaattcctacg 48319  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 447
Target Start/End: Original strand, 17290598 - 17290715
Alignment:
336 aacccgtcactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttaa---- 429  Q
    ||||| |||| |||||||| ||||||||||| ||||| |||||| | |||||||||||||||||| ||||| ||||||||| ||||| |||| |||        
17290598 aacccttcacaacccatatattcatacaacccttatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacggtaaaatc 17290697  T
430 tctatctaggttcttctc 447  Q
    ||| ||||||||||||||    
17290698 tctctctaggttcttctc 17290715  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 40391350 - 40391429
Alignment:
336 aacccgtcactacccatatgttcatacaacc-ttatgatgaatataactccccccttacctctagttttgcgaaattgatg 415  Q
    ||||| ||||||| |||||||| ||| |||| ||| |||||||| |||||||| |||||||||||||||||||||||||||    
40391350 aacccttcactactcatatgtttatataacccttacgatgaataaaactcccc-cttacctctagttttgcgaaattgatg 40391429  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 9548741 - 9548820
Alignment:
349 ccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagtttt-gcgaaattgatgatttcctacg 425  Q
    ||||||| |||||||||| |||||||||| | | |||||||||||| |||||||||| ||||||||||||||||||||||    
9548741 ccatatgatcatacaacccttatgatgaacagagactccccccttatctctagtttttgcgaaattgatgatttcctacg 9548820  T

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Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 393
Target Start/End: Original strand, 1305 - 1379
Alignment:
319 aaacaacaaaaaataacaacccgtcactacccatatgttcatacaaccttatgatgaatataactccccccttac 393  Q
    |||||| | |||| ||||| || |||||||||||||| |||||||||||||||||||||| | |||||| |||||    
1305 aaacaatagaaaacaacaatccttcactacccatatggtcatacaaccttatgatgaataaatctccccacttac 1379  T

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Target: scaffold0088 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 425
Target Start/End: Complemental strand, 35603 - 35518
Alignment:
342 tcactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacg 425  Q
    |||||||||||||||| |||||||| ||| | |||||| | ||||||||||||||||||||||  |||| ||||||| ||||||||    
35603 tcactacccatatgttgatacaacccttacgctgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacg 35518  T

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Target: scaffold0101 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 610 - 555
Alignment:
336 aacccgtcactacccatatgttcatacaaccttatgatgaatataactccccccttac 393  Q
    ||||| |||||||||||||||||||||  ||||| |||||||| ||||||||||||||    
610 aacccttcactacccatatgttcatac--ccttacgatgaataaaactccccccttac 555  T

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Target: scaffold0323 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 16216 - 16303
Alignment:
332 taacaacccgtcactacccatatgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgat 417  Q
    ||||||||| |||||||||| ||| |||||||||| || || |||||| | ||| |||||||||||||||||| | ||| ||||||||    
16216 taacaacccttcactacccacatgatcatacaacccttttggtgaatagagacttcccccttacctctagtttagagaatttgatgat 16303  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 421
Target Start/End: Complemental strand, 171557 - 171480
Alignment:
342 tcactacccatatgttcatacaaccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcc 421  Q
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171557 tcactacccagatgttcatacaaccttat-ttgaatagagact-cccccttacctctagttttccg-aattgatgacttcc 171480  T

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