View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7343_high_3 (Length: 422)
Name: NF7343_high_3
Description: NF7343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7343_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 5446716 - 5447116
Alignment:
| Q |
18 |
gagcggtataaggcagaggatgaggaggttaggaagaaggtgaaagcgaagaacttgtttgagaattatgtttatgaaacgagggagagagtgaagaaac |
117 |
Q |
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| T |
5446716 |
gagcggtataaggcagaggatgaggaggttaggaagaaggtgaaagcaaagaacttgtttgagaattatgtttatgaaatgagggagagagtgaagaaac |
5446815 |
T |
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| Q |
118 |
ttgagaaggtagtggaggaaagtatagaatggtttgacagaaaccaattggcagaaattgatgagtttgaattcaagaagcaggagttggaaaatagtat |
217 |
Q |
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| T |
5446816 |
ttgagaaggtagtggaggaaagtatagaatggtttgaaagaaaccaattggcagaaattgatgagtttgaattcaagaagcaggagttggaaaatagtat |
5446915 |
T |
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| Q |
218 |
gaagtttctctaattgtgatgctaggtaaaagatttaagaacaagtttcttgagtgtgaagcaatgtaaaattgtttgggctttgttaatcaattagtgt |
317 |
Q |
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| T |
5446916 |
gaagtttctctaattgtgatgctaggtaaaagatttaagaacaagtttcttgagtgtgaagcaatgtaaaattgtttgaactttgttaatcaattagtgt |
5447015 |
T |
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| Q |
318 |
ctatgaaattctc--gtctagtttatgcttaatttctatcctagagaaactaatggttatgcaataatgcaagaattgttataattacgttgtgatgatg |
415 |
Q |
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| T |
5447016 |
ctatgaaattctcttgtctagtttatgcttaatttctatcctagagaaactaatggttatgcaataatgcaagaattgttataattacgttgtgatgatg |
5447115 |
T |
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| Q |
416 |
t |
416 |
Q |
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| T |
5447116 |
t |
5447116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 5432040 - 5431986
Alignment:
| Q |
269 |
gagtgtgaagcaatgtaaaattgtttgggctttgttaatcaattagtgtctatga |
323 |
Q |
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| T |
5432040 |
gagtctgaagcaatgtaaaatagtttgagcttcattactcaattagtgtctatga |
5431986 |
T |
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