View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7344_low_1 (Length: 397)
Name: NF7344_low_1
Description: NF7344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7344_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 381
Target Start/End: Complemental strand, 33442259 - 33441893
Alignment:
| Q |
15 |
tcagtaagctcatttccatttgtatattctttcattatctctaatttcattgctaagaaaaactaaaattggtgattaatttcattgcagcattcaatta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33442259 |
tcagtaagctcatttccatttgtatattctttcattatctctaatttcattgctaagaaaaactaaaattggtgattaatttcattgcagcattcaatta |
33442160 |
T |
|
| Q |
115 |
tgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaactagtggacaagataaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
33442159 |
tgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaaccagtgggcaagacaaa |
33442060 |
T |
|
| Q |
215 |
attataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33442059 |
attataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaag |
33441960 |
T |
|
| Q |
315 |
atggttggtctccagtaccttcaccttctccatcaccatcacttgacctggcgacacctgaagcacc |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33441959 |
atggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacctgaagcacc |
33441893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 99 - 381
Target Start/End: Complemental strand, 33452395 - 33452113
Alignment:
| Q |
99 |
ttgcagcattcaattatgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33452395 |
ttgcagcattcaattatgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaac |
33452296 |
T |
|
| Q |
199 |
tagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataact |
298 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33452295 |
cagtgggcaagacaaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataact |
33452196 |
T |
|
| Q |
299 |
gtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggcgacacctgaagcacc |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33452195 |
gtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacctgaagcacc |
33452113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 99 - 329
Target Start/End: Complemental strand, 33399859 - 33399629
Alignment:
| Q |
99 |
ttgcagcattcaattatgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaac |
198 |
Q |
| |
|
||||||||||||| ||||||| | | || |||||||| |||||||||||||||||||| ||| |||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
33399859 |
ttgcagcattcaagtatgttgcttggaaggacaatgtggtgagagtgaatggaagtgatttccagagttgctcagttccttgggcagcaccagtgttaac |
33399760 |
T |
|
| Q |
199 |
tagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataact |
298 |
Q |
| |
|
|||||||| ||||||||| | | |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| | |
|
|
| T |
33399759 |
aagtggacatgataaaattgcattgacaacctatgggagaagatggtacatttcaggtgttgccaatcactgcgaaaatggacaaaagcttttcataaat |
33399660 |
T |
|
| Q |
299 |
gtgcagccaaaacaagatggttggtctccag |
329 |
Q |
| |
|
|| ||||||||||||||||||| ||||| |
|
|
| T |
33399659 |
gttttaccaaaacaagatggttggtatccag |
33399629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 99 - 342
Target Start/End: Complemental strand, 33395972 - 33395729
Alignment:
| Q |
99 |
ttgcagcattcaattatgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgctcagttcctttgacagcacctgtgttaac |
198 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||| ||||||||||| |||||| || |||||| |||||||| |
|
|
| T |
33395972 |
ttgcagcattcaactatgttggtggtaaggacaatgtggtgagagtgaatggaagtgatttccagagttgctcaattccttggagagcaccagtgttaac |
33395873 |
T |
|
| Q |
199 |
tagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataact |
298 |
Q |
| |
|
||||||||| |||| |||| || | ||||||||||| |||||||||||||||||| ||| | | |||||||| | ||| |||||||||||||||| |
|
|
| T |
33395872 |
tagtggacatgatacaattttattgacaacctatggaagaagatggtacatttcaggtgctgctcatcactgcaatcttggccaaaagcttttcataaac |
33395773 |
T |
|
| Q |
299 |
gtgcagccaaaacaagatggttggtctccagtaccttcaccttc |
342 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
33395772 |
gtgcagccaccacagtttggttggtctccagtaccctcaccttc |
33395729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 33452509 - 33452463
Alignment:
| Q |
15 |
tcagtaagctcatttccatttgtatattctttcattatctctaattt |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33452509 |
tcagtaagctcatttccatttgtatattctttcgttatctctaattt |
33452463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University