View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7344_low_2 (Length: 369)
Name: NF7344_low_2
Description: NF7344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7344_low_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 29846690 - 29847043
Alignment:
| Q |
15 |
tgttaggattcccacgtcaaatagataaaagtatttgatgtggtatttaagacatgaattctcccatctaataaagcagccttttaaattaagttatcct |
114 |
Q |
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| T |
29846690 |
tgttaggagtctcacatcaaatagataaaagtatttgatgtaatatttaagacatgaattctcctatctaataaagcaaccttttaaattaagttatctt |
29846789 |
T |
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| Q |
115 |
tatgagctaaaattctaacagatttttggatggttcctgactcaattatttgataagattatgtttacttcaatgccaaactctaaactaccaatgcgcc |
214 |
Q |
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| T |
29846790 |
tatgagctaaaattctaacagatttttagacggttcctgactcaattatt-gataagattatatttacttcaatgccaaactctaaactaccaatgctcc |
29846888 |
T |
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| Q |
215 |
gggaacattaaccacaatttttagtgtcgctgttttaactttgttaccattaaaattgttatcgatatttattataaaacttgtgtgtcaagtaatattt |
314 |
Q |
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| T |
29846889 |
gggaacattaactacaatttttagtgtcgctgttttaactttgttaccattaaaattgttatcgatatttaatataaaacttgtgtgtcaagtaatattt |
29846988 |
T |
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| Q |
315 |
ttggtttttagttgctataaatacagattctacttatccatttactatctttcct |
369 |
Q |
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| T |
29846989 |
ttggtttttagttgctataaatacagattctacttatccatttactatctttcct |
29847043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 21397237 - 21397286
Alignment:
| Q |
15 |
tgttaggattcccacgtcaaatagataaaagtatttgatgtggtatttaa |
64 |
Q |
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| T |
21397237 |
tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaa |
21397286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 21791730 - 21791779
Alignment:
| Q |
15 |
tgttaggattcccacgtcaaatagataaaagtatttgatgtggtatttaa |
64 |
Q |
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| T |
21791730 |
tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaa |
21791779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 10321693 - 10321637
Alignment:
| Q |
15 |
tgttaggattcccacgtcaaatagataaaagtatttgatgtggtatttaagacatga |
71 |
Q |
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| T |
10321693 |
tgttaggagtcccacatcagataaataaaagtgtttgatgtggtacttaagccatga |
10321637 |
T |
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