View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7344_low_3 (Length: 349)
Name: NF7344_low_3
Description: NF7344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7344_low_3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 35 - 349
Target Start/End: Original strand, 36229788 - 36230105
Alignment:
| Q |
35 |
gtatacacaaaacatatttcttatttaaatg----agataaggatattattgcaagaaaacaagcaacaaagctctctgattggtggttgcctgacagtt |
130 |
Q |
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| T |
36229788 |
gtatacacaaaacatatttcttatttaaatgaatgagataaggatattattgcaagaaaacaagcaacaaagctctctgattggtggttgcctgacagtt |
36229887 |
T |
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| Q |
131 |
tgtcatccatattctccttgaataattaatttacttgttgtacaatcttttg--nnnnnnncaacacgtgattttgctcagaattaaataaataaatagc |
228 |
Q |
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| T |
36229888 |
tgtcatccatattctccttgaataattaatttacttgttgtacaatcttttgaaaaaaacacaacacgtgattttgctcagaaataaataaataaatagc |
36229987 |
T |
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| Q |
229 |
agtgctgaatcaaaaaatgttatgtcaacacaaagtaaaagacgggtttatcattcatcacatggagctgcatgcagctgctgctgcaaaaggtaagtag |
328 |
Q |
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| T |
36229988 |
aatgctgaatcaaaaaatgttatgtcaacacaaagtcaaagacgggtttatcattcatcacatggagctcc---ctgctgctgctgcaaacggtaagtag |
36230084 |
T |
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| Q |
329 |
ttatagtaattcaaaaaattc |
349 |
Q |
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| T |
36230085 |
taatagtaattcaaaaaattc |
36230105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 36250307 - 36250378
Alignment:
| Q |
278 |
atcattcatcacatggagctgcatgcagctgctgctgcaaaaggtaagtagttatagtaattcaaaaaattc |
349 |
Q |
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| T |
36250307 |
atcattcatcacatggagctggctgctgctgctgctgcaaacggtaagtagtaatagtaattgataaaattc |
36250378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 36250063 - 36250140
Alignment:
| Q |
54 |
cttatttaaatgagataaggatattattgcaagaaaacaagcaacaaagctctctgattggtggttgcctgacagtttgtca |
135 |
Q |
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| T |
36250063 |
cttattttaatcaaataagtatattattgcaagaaa----gcaacaaagctctatgataggtggttgcctgaaagtttgtca |
36250140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 36250209 - 36250274
Alignment:
| Q |
214 |
aaataaataaatagcagtgctgaatcaaaaaatgttatgtcaacacaaagtaaaagacgggtttat |
279 |
Q |
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| T |
36250209 |
aaataaataaatagcactaccaaatcaaaaaatggtatctcaacaaaaagtcaaagaggggtttat |
36250274 |
T |
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