View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7344_low_4 (Length: 270)

Name: NF7344_low_4
Description: NF7344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7344_low_4
NF7344_low_4
[»] chr6 (6 HSPs)
chr6 (6-169)||(15923802-15923980)
chr6 (167-252)||(15932252-15932337)
chr6 (17-167)||(7090675-7090825)
chr6 (21-159)||(10515822-10515960)
chr6 (24-165)||(15950469-15950610)
chr6 (24-165)||(23631255-23631396)
[»] chr7 (8 HSPs)
chr7 (6-169)||(19017277-19017440)
chr7 (8-169)||(665241-665402)
chr7 (21-156)||(32535250-32535385)
chr7 (52-165)||(15455502-15455615)
chr7 (24-165)||(29526497-29526638)
chr7 (115-169)||(21588403-21588457)
chr7 (127-161)||(27244312-27244346)
chr7 (106-155)||(21824128-21824177)
[»] chr8 (2 HSPs)
chr8 (10-155)||(3989173-3989318)
chr8 (9-169)||(7994839-7994999)
[»] chr5 (2 HSPs)
chr5 (27-167)||(31291390-31291528)
chr5 (20-161)||(11619432-11619573)
[»] chr4 (2 HSPs)
chr4 (6-99)||(20089344-20089437)
chr4 (24-165)||(47782660-47782801)
[»] chr1 (4 HSPs)
chr1 (24-165)||(26419044-26419185)
chr1 (24-165)||(32108095-32108236)
chr1 (20-96)||(21179841-21179917)
chr1 (24-162)||(11644480-11644618)
[»] chr3 (1 HSPs)
chr3 (113-158)||(20820477-20820522)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 15923980 - 15923802
Alignment:
Q  6 cagagatatagatatcaaatggaggaaaccaaggagcggtagacataaatgtaatgttgat---------------gcctcgttttcaaacaccagcaat 90  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||               ||||| ||||||||| ||||||||    
T  15923980 cagagatatagatatcaaatggtggaaaccaaggagcggtagacataaatgtaatgttgataaatgtaatgttgatgcctcattttcaaactccagcaat 15923881  T
Q  91 gaggtaggaataggcatgtacattcgagattcagcagggaaccatgtccgctcaaaaatcatgtggtttacaccattgt 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15923880 gaggtaggaataggcatgtacattcgagattcagcagggaaccatgtccgctcaaaaatcatgtggtttacaccattgt 15923802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 15932337 - 15932252
Alignment:
Q  167 tgtatcattaataaaatgaagcttagcaaacaatatcatctttatacaaacattgaactttctacattttaacaacatcaacaacc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15932337 tgtatcattaataaaatgaagcttagcaaacaatatcatctttatacaaacattgaactttctacattttaacaacatcaacaacc 15932252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 7090825 - 7090675
Alignment:
Q  17 atatcaaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcg 116  Q
    |||||| ||||| ||| |||| | | ||||| | ||||||||||||||||||||| ||||| ||| |||  ||| ||||||| |||||||| | || |||    
T  7090825 atatcagatggaagaagccaatgtgtggtaggcttaaatgtaatgttgatgcctcattttctaactccaataataaggtaggtataggcatatgcactcg 7090726  T
Q  117 agattcagcagggaaccatgtccgctcaaaaatcatgtggtttacaccatt 167  Q
    |||||||| ||| ||||||||   |||||||| ||| |||||||| |||||    
T  7090725 agattcagtaggaaaccatgtttactcaaaaaccatctggtttaccccatt 7090675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 10515822 - 10515960
Alignment:
Q  21 caaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagat 120  Q
    ||||||||||||||| || || |||||| | ||||||||||||||||||||  || |||| ||||  ||| |||||||| |  | |||| ||| |||||     
T  10515822 caaatggaggaaaccgagaagtggtagatacaaatgtaatgttgatgcctccattccaaataccactaataaggtaggattgtgtatgtgcatccgagac 10515921  T
Q  121 tcagcagggaaccatgtccgctcaaaaatcatgtggttt 159  Q
    ||||  ||||| ||||||||||||||||  |||||||||    
T  10515922 tcagatgggaatcatgtccgctcaaaaacaatgtggttt 10515960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 15950469 - 15950610
Alignment:
Q  24 atggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagattca 123  Q
    ||||||||| |||||||| || ||||  ||||| |||||||||||||| ||||| |   |||||||| | ||||| || || |||| |||||| |||||     
T  15950469 atggaggaagccaaggagtggaagactcaaatgcaatgttgatgcctctttttctacatccagcaataaagtaggtattggtatgtgcattcgcgattcg 15950568  T
Q  124 gcagggaaccatgtccgctcaaaaatcatgtggtttacacca 165  Q
    | ||| ||||| ||||| ||||||| |||||||||| |||||    
T  15950569 gaaggaaaccacgtccggtcaaaaaccatgtggttttcacca 15950610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 23631255 - 23631396
Alignment:
Q  24 atggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagattca 123  Q
    |||||||||||||||||| |||||||  ||||| ||||||| || ||| ||||| |   |||| ||| | ||||| ||| |||| |  ||||| ||||||    
T  23631255 atggaggaaaccaaggagtggtagactcaaatgcaatgttgttgtctctttttctacatccagtaataaagtaggcatatgcatatgtattcgtgattca 23631354  T
Q  124 gcagggaaccatgtccgctcaaaaatcatgtggtttacacca 165  Q
    | ||| |||||||| || ||||| | |||||||||| |||||    
T  23631355 gaaggaaaccatgttcgttcaaagaccatgtggttttcacca 23631396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 19017440 - 19017277
Alignment:
Q  6 cagagatatagatatcaaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggc 105  Q
    |||||||| ||||| |  ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||   |||||| ||||||||||| ||    
T  19017440 cagagatagagatacctgatggagggaaccaaggagcggtagacttaaatgtaatgttgatgcctcattttctaaccatagcaataaggtaggaatatgc 19017341  T
Q  106 atgtacattcgagattcagcagggaaccatgtccgctcaaaaatcatgtggtttacaccattgt 169  Q
    |||| ||||| |||||||||||| |||||||||| |||||||| ||| ||| ||||||||||||    
T  19017340 atgtgcattcaagattcagcaggaaaccatgtcctctcaaaaaccatttggattacaccattgt 19017277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 665402 - 665241
Alignment:
Q  8 gagatatagatatcaaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcat 107  Q
    ||||||||||||||| ||||||| ||| |||||||||||||  ||||||||||||||||||||| |||||||  ||||||||| ||||| || | || ||    
T  665402 gagatatagatatcagatggagggaactaaggagcggtagatttaaatgtaatgttgatgcctctttttcaactaccagcaataaggtaagattgggtat 665303  T
Q  108 gtacattcgagattcagcagggaaccatgtccgctcaaaaatcatgtggtttacaccattgt 169  Q
    || |||||||||||||| ||| ||||||||| |||||||||  |||||||| || |||||||    
T  665302 gtgcattcgagattcagaaggaaaccatgtctgctcaaaaactatgtggttcactccattgt 665241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 32535385 - 32535250
Alignment:
Q  21 caaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagat 120  Q
    ||||||||||||||  ||||| || ||| ||||||| |||||||||||| | |||||||| ||||||||| |||||||| | || |||| ||| |||||     
T  32535385 caaatggaggaaacagaggagtggaagatataaatgcaatgttgatgccaccttttcaaataccagcaataaggtaggattgggtatgtgcatccgagac 32535286  T
Q  121 tcagcagggaaccatgtccgctcaaaaatcatgtgg 156  Q
    ||||  || ||||||||| ||| ||||| |||||||    
T  32535285 tcagatggaaaccatgtctgctaaaaaaccatgtgg 32535250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 15455502 - 15455615
Alignment:
Q  52 aaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagattcagcagggaaccatgtccgctcaaaaatca 151  Q
    ||||| |||||||||||||| ||||| |   | |||||| | ||||| || || |||| |||||| ||||| | ||| ||||||||||| ||||||| ||    
T  15455502 aaatgcaatgttgatgcctctttttctacatctagcaataaagtaggtattggtatgtgcattcgcgattcggaaggaaaccatgtccggtcaaaaacca 15455601  T
Q  152 tgtggtttacacca 165  Q
    |||||||| |||||    
T  15455602 tgtggttttcacca 15455615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 29526497 - 29526638
Alignment:
Q  24 atggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagattca 123  Q
    ||||||||| |||| ||| || ||||  ||||| |||||||||||||| ||||| |   |||||||| | ||||| || || |||| |||||| |||||     
T  29526497 atggaggaagccaaagagtggaagactcaaatgcaatgttgatgcctctttttctacatccagcaataaagtaggtattggtatgtgcattcgcgattcg 29526596  T
Q  124 gcagggaaccatgtccgctcaaaaatcatgtggtttacacca 165  Q
    | ||| || || ||||| ||||||| |||||||||| |||||    
T  29526597 gaaggaaatcacgtccggtcaaaaaccatgtggttttcacca 29526638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 21588457 - 21588403
Alignment:
Q  115 cgagattcagcagggaaccatgtccgctcaaaaatcatgtggtttacaccattgt 169  Q
    |||||||||||||| |||||||| |||||||||| ||| ||||| || |||||||    
T  21588457 cgagattcagcaggaaaccatgttcgctcaaaaaccatatggttcactccattgt 21588403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 27244346 - 27244312
Alignment:
Q  127 gggaaccatgtccgctcaaaaatcatgtggtttac 161  Q
    ||||||||||||||||| |||||||||||||||||    
T  27244346 gggaaccatgtccgctctaaaatcatgtggtttac 27244312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 21824128 - 21824177
Alignment:
Q  106 atgtacattcgagattcagcagggaaccatgtccgctcaaaaatcatgtg 155  Q
    |||| |||||||||||| |  ||||||||||||||||| |||||||||||    
T  21824128 atgtgcattcgagattcggatgggaaccatgtccgctctaaaatcatgtg 21824177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 3989173 - 3989318
Alignment:
Q  10 gatatagatatcaaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgt 109  Q
    |||| |||||||| |||||||||||||||| ||||||||  ||| ||||||||||||||||| ||||| ||  ||| |||| |||| |||||||||||||    
T  3989173 gatagagatatcagatggaggaaaccaaggtgcggtagaattaactgtaatgttgatgcctctttttctaattccaacaataaggtcggaataggcatgt 3989272  T
Q  110 acattcgagattcagcagggaaccatgtccgctcaaaaatcatgtg 155  Q
     |||||||||||||||| | ||||||||||||||||||| ||||||    
T  3989273 gcattcgagattcagcaagaaaccatgtccgctcaaaaaccatgtg 3989318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 7994839 - 7994999
Alignment:
Q  9 agatatagatatcaaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatg 108  Q
    ||||||||| |||| ||||||||||||||||||||| | |  |||||||||||||| ||| || |||||||| | ||||||| ||||| || | ||||||    
T  7994839 agatatagacatcagatggaggaaaccaaggagcggcatatttaaatgtaatgttgttgcatctttttcaaatagcagcaataaggtaagattgggcatg 7994938  T
Q  109 tacattcgagattcagcagggaaccatgtccgctcaaaaatcatgtggtttacaccattgt 169  Q
    | |||||||||||||||||| ||||||||||||| ||||| | ||||||| || |||||||    
T  7994939 tgcattcgagattcagcaggaaaccatgtccgctaaaaaaccctgtggttcactccattgt 7994999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 31291390 - 31291528
Alignment:
Q  27 gaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagattcagca 126  Q
    ||||| |||||| |||| ||||| ||||||||||||| ||||||| ||||| |     |||||| ||||||||||||||||||||||||||||||||| |    
T  31291390 gaggataccaagaagcgatagacttaaatgtaatgttaatgcctctttttctattt--agcaataaggtaggaataggcatgtacattcgagattcagta 31291487  T
Q  127 gggaaccatgtccgctcaaaaatcatgtggtttacaccatt 167  Q
    |||| |||||| ||||||||||  ||||| ||||| |||||    
T  31291488 gggagccatgttcgctcaaaaacaatgtgttttacgccatt 31291528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 11619573 - 11619432
Alignment:
Q  20 tcaaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgaga 119  Q
    |||| ||||||||||| ||||| || ||| | ||||| |||||| |||| || |||||||| ||  ||||| |||||||| | || |||| ||| |||||    
T  11619573 tcaattggaggaaacccaggaggggaagatacaaatgcaatgtttatgcttctttttcaaatacttgcaataaggtaggatttggaatgtgcatccgaga 11619474  T
Q  120 ttcagcagggaaccatgtccgctcaaaaatcatgtggtttac 161  Q
     ||||  ||||| |||||| |||| ||||  |||||||||||    
T  11619473 ctcagatgggaatcatgtctgctctaaaacaatgtggtttac 11619432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 20089437 - 20089344
Alignment:
Q  6 cagagatatagatatcaaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtagga 99  Q
    |||||||||||| || | ||||||||||||||||||||||||   ||||||||| || |||||||| |||||||| |||  |||| ||||||||    
T  20089437 cagagatatagacattagatggaggaaaccaaggagcggtaggtttaaatgtaacgtggatgcctctttttcaaataccgacaataaggtagga 20089344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 47782660 - 47782801
Alignment:
Q  24 atggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagattca 123  Q
    ||||||||| |||||||| || ||||  ||||| |||||||||||||| ||||| |   |||||||| | ||||| || || |||| |||||| |||||     
T  47782660 atggaggaagccaaggagtggaagactcaaatgcaatgttgatgcctctttttctacatccagcaataaagtaggtattggtatgtgcattcgcgattcg 47782759  T
Q  124 gcagggaaccatgtccgctcaaaaatcatgtggtttacacca 165  Q
    | ||| ||||| ||||  ||||||| |||||||||| |||||    
T  47782760 gaaggaaaccacgtccagtcaaaaaccatgtggttttcacca 47782801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 26419185 - 26419044
Alignment:
Q  24 atggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagattca 123  Q
    ||||||||| |||||||| || ||||  ||||| |||||||||||||| ||||| |   |||||||| | ||||| || || |||| |||||| |||||     
T  26419185 atggaggaagccaaggagtggaagactcaaatgcaatgttgatgcctctttttctacatccagcaataaagtaggtattggtatgtgcattcgcgattcg 26419086  T
Q  124 gcagggaaccatgtccgctcaaaaatcatgtggtttacacca 165  Q
    | ||| ||||| ||||| ||||||| |||||||||| |||||    
T  26419085 gaaggaaaccacgtccggtcaaaaaccatgtggttttcacca 26419044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 32108095 - 32108236
Alignment:
Q  24 atggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagattca 123  Q
    ||||||||| |||||||| || ||||  ||||| |||||||||||||| ||||| |   |||||||| | ||||| || || |||| |||||| |||||     
T  32108095 atggaggaagccaaggagtggaagactcaaatgcaatgttgatgcctctttttctacatccagcaataaagtaggtattggtatgtgcattcgcgattcg 32108194  T
Q  124 gcagggaaccatgtccgctcaaaaatcatgtggtttacacca 165  Q
    | ||| ||||| ||||  ||||||| |||||||||| |||||    
T  32108195 gaaggaaaccacgtcccgtcaaaaaccatgtggttttcacca 32108236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 21179841 - 21179917
Alignment:
Q  20 tcaaatggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggta 96  Q
    |||||||||||||||| ||||| || ||| | ||||| |||||||||||||| |||||||| |||| |||| |||||    
T  21179841 tcaaatggaggaaacccaggaggggaagatacaaatgcaatgttgatgcctcattttcaaataccatcaataaggta 21179917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 11644480 - 11644618
Alignment:
Q  24 atggaggaaaccaaggagcggtagacataaatgtaatgttgatgcctcgttttcaaacaccagcaatgaggtaggaataggcatgtacattcgagattca 123  Q
    |||||||||||| || || || ||| ||||||| ||| | |||||||| |||||||| ||||  ||| |||||||| | || |||| ||| ||||| |||    
T  11644480 atggaggaaaccgagaagtggcagatataaatgcaatatcgatgcctccttttcaaataccacaaataaggtaggattgggaatgtgcatccgagactca 11644579  T
Q  124 gcagggaaccatgtccgctcaaaaatcatgtggtttaca 162  Q
       ||||| ||| ||||||| ||||  ||||||||||||    
T  11644580 tatgggaatcatatccgctctaaaacaatgtggtttaca 11644618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 20820477 - 20820522
Alignment:
Q  113 ttcgagattcagcagggaaccatgtccgctcaaaaatcatgtggtt 158  Q
    |||||||||||||| | ||||| ||||||||||||| |||||||||    
T  20820477 ttcgagattcagcatgaaaccaagtccgctcaaaaaccatgtggtt 20820522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University