View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7344_low_5 (Length: 234)
Name: NF7344_low_5
Description: NF7344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7344_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 36231777 - 36231887
Alignment:
| Q |
113 |
atttagattatggataaaaagttaaaaaccagatcgaatgatctcattttttcaatacgtgaagatagagaccaaaagttcatagcaaaagctgttgaag |
212 |
Q |
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| T |
36231777 |
atttagattatggataaaaagttaaaaaccagatcgaatgatctcattttttcaatacgtgaagatagagaccgaaagttcatagcaaaagctgttgaag |
36231876 |
T |
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| Q |
213 |
aagcatacaaa |
223 |
Q |
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| T |
36231877 |
aagcatacaaa |
36231887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 36230093 - 36230179
Alignment:
| Q |
1 |
attcaaaaaattcttcatatactactgcttataatttataaacatcttcaattatcgtcctta----gtgtgttccacaatttggta |
83 |
Q |
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| T |
36230093 |
attcaaaaaattcttcatatactactgcttataatttataaacatcttcaattatcgtccttagtgtgtgtgttccacaatttggta |
36230179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 36250866 - 36250909
Alignment:
| Q |
176 |
gatagagaccaaaagttcatagcaaaagctgttgaagaagcata |
219 |
Q |
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| T |
36250866 |
gatagagaccaaaagttcataacaaaagctgttgaagaagcata |
36250909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 36250397 - 36250440
Alignment:
| Q |
39 |
taaacatcttcaattatcgtccttagtgtgttccacaatttggt |
82 |
Q |
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| T |
36250397 |
taaacatcttcaattatcatccttagtgtgttctacaatttggt |
36250440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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