View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7345_high_3 (Length: 261)
Name: NF7345_high_3
Description: NF7345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7345_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 38566802 - 38567034
Alignment:
| Q |
10 |
agaacctgtggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatttcttcaatcgttgctccatctttaccgtatgaaatgt |
109 |
Q |
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| T |
38566802 |
agaacctggggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatctcttcaatcgttgctccatctttaccatatgaaatgt |
38566901 |
T |
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| Q |
110 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38566902 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
38567001 |
T |
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| Q |
210 |
gataagaacttcacctgcctgtggatcatagaa |
242 |
Q |
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| T |
38567002 |
gataagaacttcacctgcctgtggatcatagaa |
38567034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 38525677 - 38525909
Alignment:
| Q |
10 |
agaacctgtggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatttcttcaatcgttgctccatctttaccgtatgaaatgt |
109 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |
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| T |
38525677 |
agaacctgtggaagtttatcaatgaatttggcggcgtttgcaagttcggatgcagatcttatttcttcaattgttgctccatctttaccatatgcaatgt |
38525776 |
T |
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| Q |
110 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
209 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
38525777 |
tatccttaatgctggatgcaaataacactggctcctggctgacaagaccaattttccctctgatccacctaagctgaagttctttcatgttaattccatc |
38525876 |
T |
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| Q |
210 |
gataagaacttcacctgcctgtggatcatagaa |
242 |
Q |
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| T |
38525877 |
gataagtacttcaccggcctgtggatcatagaa |
38525909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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