View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7345_low_11 (Length: 227)
Name: NF7345_low_11
Description: NF7345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7345_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 3028366 - 3028557
Alignment:
| Q |
17 |
acatcatgaaccaagattatgatggtgacaaaaacataagaaatacaattctaccatcagtaatggggttaaggttctcttagatagaaaacatttgcag |
116 |
Q |
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| T |
3028366 |
acatcatgaaccaagattatgatggtgacaaaaacataagaaatacaattctaccatcagtaatggggttaaggttctcttagatagaaaacatttgcag |
3028465 |
T |
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| Q |
117 |
tacaaaaccaaatgaaagacatgataattatatgcagattaaatagaagatatacataaaacgaaggaaataagtgaacgggatgataaaga |
208 |
Q |
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| T |
3028466 |
tacaaaaccaaatgaaagacatgataattatatgcagattaaatagaagatatacataaaacgaagcaaataagtgaacgggatgataaaga |
3028557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 3032380 - 3032505
Alignment:
| Q |
17 |
acatcatgaaccaagattatgatggtgacaaaaacataagaaatacaattctaccatcagtaatggg--gttaaggttctcttagatagaaaacatttgc |
114 |
Q |
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| T |
3032380 |
acatcatgaaccaagattatgacggtgacaaaaacatgtgaaatacaattctaccatcagtaatgggtatataaggttct-tctgatagaaaagatttgt |
3032478 |
T |
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| Q |
115 |
agtacaaaaccaaatgaaagacatgat |
141 |
Q |
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| T |
3032479 |
agtacaaaaccaaatgaaagacatgat |
3032505 |
T |
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