View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7345_low_4 (Length: 260)
Name: NF7345_low_4
Description: NF7345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7345_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 51113466 - 51113221
Alignment:
| Q |
4 |
aatttttgaacaagtggaaaaacaattggtagttgatgtagtaatgactagagagattaaccctgatgtagtaatgactagagagactctctctacctca |
103 |
Q |
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| T |
51113466 |
aatttttgaacaagtggaaaaacaattggtagttgatgtagtaatgactagagagattaaccctgatgtagtaatgactagagagactctctctacctca |
51113367 |
T |
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| Q |
104 |
tcaagtaattggtcgttgttacattctaaagggctgctgaggtcgatttcttcaaataaagggaagcattcagcgatgaccaacaagtcggtgctgttga |
203 |
Q |
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| T |
51113366 |
tcaagtaattggtcgttgttacattctaaagggctgctgaggtcgagttcttcaaataaagggaagcattcagcgatgaccaacaagtcggtgctgttga |
51113267 |
T |
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| Q |
204 |
tacaacttatgtgcgaacaagtgagagaggtcagagttgtaatatt |
249 |
Q |
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| T |
51113266 |
tacaacttatgtgcgaacaagtgagagaggtcagagttgtaatatt |
51113221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 532597 - 532661
Alignment:
| Q |
1 |
tacaatttttgaacaagtggaaaaacaattggtagttgatgtagtaatgactagagagattaacc |
65 |
Q |
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| T |
532597 |
tacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaacc |
532661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9581464 - 9581526
Alignment:
| Q |
1 |
tacaatttttgaacaagtggaaaaacaattggtagttgatgtagtaatgactagagagattaa |
63 |
Q |
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| T |
9581464 |
tacaatttttgaacaagtggaaaagcaaatggttgttgaggtagtcatgacgagagagattaa |
9581526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9587035 - 9587097
Alignment:
| Q |
1 |
tacaatttttgaacaagtggaaaaacaattggtagttgatgtagtaatgactagagagattaa |
63 |
Q |
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|||||||||||||||||||||||| | |||||| ||||| |||| |||| ||||||||||| |
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| T |
9587035 |
tacaatttttgaacaagtggaaaagcgattggttgttgaggtagctctgaccagagagattaa |
9587097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 17642996 - 17642957
Alignment:
| Q |
212 |
atgtgcgaacaagtgagagaggtcagagttgtaatattct |
251 |
Q |
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| T |
17642996 |
atgtgggaacaagtgagagaggtcaaagttgtaatattct |
17642957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 17635711 - 17635679
Alignment:
| Q |
218 |
gaacaagtgagagaggtcagagttgtaatattc |
250 |
Q |
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| T |
17635711 |
gaacaagtgagagaggtcaaagttgtaatattc |
17635679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 32268536 - 32268573
Alignment:
| Q |
218 |
gaacaagtgagagaggtcagagttgtaatattcttcga |
255 |
Q |
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| T |
32268536 |
gaacaagtgagagaggtcaaagttgtaatcttcttcga |
32268573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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