View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7345_low_8 (Length: 249)
Name: NF7345_low_8
Description: NF7345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7345_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 44032836 - 44033069
Alignment:
| Q |
1 |
catgtaaaagaaaattggatcatnnnnnnnttgatgtatttagtctcaattttaaataagatatatcaactttagttgatctaactttctcttatataaa |
100 |
Q |
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| T |
44032836 |
catgtaaaagaaaattggatcataaaaaaattgatttatttagtctcaattttaaataagatatatcaactttggttgatctaactttctcttatatta- |
44032934 |
T |
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| Q |
101 |
aagaacagagggagtattacttatattaataaattctaatttttcaaatacaaaatccgacaccataatagaaacaactccatacgaatgcccatgttgt |
200 |
Q |
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| T |
44032935 |
--gaatagagggaatattacttatattaataaattctaatttttcaaatacaaaatccgacaccataatagaaacaactcaatacgaatgcccatgttgt |
44033032 |
T |
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| Q |
201 |
agcaaacgtagctacatccttagctagcttcaatatt |
237 |
Q |
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| T |
44033033 |
agcaaacgtagctacatccttagctagcttcaatatt |
44033069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 31748383 - 31748443
Alignment:
| Q |
37 |
tatttagtctcaattttaaataagatatatcaactttagttgatctaactttctcttatata |
98 |
Q |
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| T |
31748383 |
tatttagtctaaattttaaacaagatatatcaacttttgtt-attaaactttatcttatata |
31748443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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