View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7346_low_4 (Length: 261)
Name: NF7346_low_4
Description: NF7346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7346_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 21973420 - 21973191
Alignment:
| Q |
20 |
cgctaacccaggaaaacatatcagccaccgtattcaacttattcttagccaagtcaaataaatgcctaaaccgcacacacaaaggagtccctcctaacca |
119 |
Q |
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| T |
21973420 |
cgctaacccaggaaaacatatcagccaccgtattcaacttattcttagccaagtcaaataaatgcctaaaccacacacacaaaggagtccctcctaacca |
21973321 |
T |
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| Q |
120 |
cgggtcataccaaaaataagaatgcaacccgtttccaacctttttcgagacactcacctcaaaccaattacctccaacaccacccaccctatcacggatt |
219 |
Q |
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| T |
21973320 |
cgggtcataccaaaaataagaatgcaacccgtttccaacctttttcgagacactcacctcaaaccaattacctccaacaccacccaccctatcacggatt |
21973221 |
T |
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| Q |
220 |
tcagcaatctccctacaccacgttgatgtc |
249 |
Q |
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| T |
21973220 |
ttagcaatctccctccaccacgttgatgtc |
21973191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 21517628 - 21517480
Alignment:
| Q |
53 |
tcaacttattcttagccaagtcaaataaatgcctaaaccgcacacacaaaggagtccctcctaaccacgggtcataccaaaaataagaatgcaacccgtt |
152 |
Q |
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| T |
21517628 |
tcaacttattctcggccaagtccaataaactcttaaaccgcacacacaaaggtgtccctcctaaccaagggtcataccaaaaataagaatgcaacccatt |
21517529 |
T |
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| Q |
153 |
tccaacctttttcgagacactcacctcaaaccaattacctccaacacca |
201 |
Q |
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| T |
21517528 |
tccaaccttcttcaagacactcttctcaaaccaacaacctccaacacca |
21517480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 28430453 - 28430515
Alignment:
| Q |
171 |
actcacctcaaaccaattacctccaacaccacccaccctatcacggatttcagcaatctccct |
233 |
Q |
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| T |
28430453 |
actctcctcaaaccaactacctcctacaccgcccaccccatcacggattttagcaatctccct |
28430515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 28598288 - 28598332
Alignment:
| Q |
56 |
acttattcttagccaagtcaaataaatgcctaaaccgcacacaca |
100 |
Q |
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| T |
28598288 |
acttattcttagccaagtcaaagagacgcctaaaccgcacacaca |
28598332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 4324126 - 4324066
Alignment:
| Q |
75 |
aaataaatgcctaaaccgcacacacaaaggagtccctcctaaccacgggtcataccaaaaa |
135 |
Q |
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|||||| |||| ||||||||||| ||||||||| | ||||||||| |||||||||||||| |
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| T |
4324126 |
aaataagtgccgaaaccgcacactgaaaggagtctcacctaaccaccggtcataccaaaaa |
4324066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 30792997 - 30792935
Alignment:
| Q |
73 |
tcaaataaatgcctaaaccgcacacacaaaggagtccctcctaaccacgggtcataccaaaaa |
135 |
Q |
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| T |
30792997 |
tcaaataagtgcctaaaccgcacactaaaaggagtctcacctatccaccgatcataccaaaaa |
30792935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 30802853 - 30802791
Alignment:
| Q |
73 |
tcaaataaatgcctaaaccgcacacacaaaggagtccctcctaaccacgggtcataccaaaaa |
135 |
Q |
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|||||||| |||||||||||||||| ||||||||| | |||| |||| | |||||||||||| |
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| T |
30802853 |
tcaaataagtgcctaaaccgcacactaaaaggagtctcacctatccaccgatcataccaaaaa |
30802791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 29916451 - 29916523
Alignment:
| Q |
47 |
ccgtattcaacttattcttagccaagtcaaataaatgcctaaaccgcacacacaaaggagtccctcctaacca |
119 |
Q |
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| T |
29916451 |
ccgtactcgacttattctcggccaagtcgaataggggcctaaaccgcacacgcaaaagagaccctcctaacca |
29916523 |
T |
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