View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7347_high_10 (Length: 580)

Name: NF7347_high_10
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7347_high_10
NF7347_high_10
[»] chr3 (5 HSPs)
chr3 (55-574)||(44975100-44975619)
chr3 (142-311)||(44973707-44973876)
chr3 (402-436)||(32703065-32703099)
chr3 (384-434)||(43116539-43116589)
chr3 (384-433)||(23785162-23785213)
[»] chr8 (5 HSPs)
chr8 (246-306)||(40087365-40087425)
chr8 (246-301)||(40078048-40078103)
chr8 (384-434)||(29699163-29699213)
chr8 (246-304)||(40082166-40082224)
chr8 (384-420)||(7712135-7712171)
[»] chr4 (3 HSPs)
chr4 (384-434)||(45516665-45516716)
chr4 (402-434)||(19422345-19422377)
chr4 (402-434)||(27321942-27321974)
[»] chr7 (3 HSPs)
chr7 (384-434)||(27481405-27481455)
chr7 (384-431)||(1431422-1431469)
chr7 (384-430)||(39505866-39505912)
[»] chr5 (2 HSPs)
chr5 (402-436)||(8472036-8472070)
chr5 (384-434)||(37063185-37063235)
[»] chr1 (1 HSPs)
chr1 (405-434)||(20713586-20713615)
[»] scaffold0508 (1 HSPs)
scaffold0508 (378-434)||(9886-9942)
[»] chr6 (1 HSPs)
chr6 (384-432)||(32975887-32975935)


Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 55 - 574
Target Start/End: Complemental strand, 44975619 - 44975100
Alignment:
Q  55 actaaacaatcactacctatcaccaaaacagaaatagaataggcatatacatcatgaaccattttcataattacaaacacttaagcttatgcagcagcag 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44975619 actaaacaatcactacctatcaccaaaacagaaatagaataggcatatacatcatgaaccattttcataattacaaacacttaagcttatgcagcagcag 44975520  T
Q  155 catcaacttcgcctctcatcaaactcccaaaatcctcatgaacagtagtggattctattattattatctcagtctgattgaagcagtatataggagcctg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44975519 catcaacttcgcctctcatcaaactcccaaaatcctcatgaacagtagtggattctattattattatctcagtctgattgaagcagtatataggagcctg 44975420  T
Q  255 ccaatgcggatcctcaagcactgctccaacctcaaatgtcatcacatgagcagtatatcctccgtctattaaaattatcactatatcaaacttcatttca 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44975419 ccaatgcggatcctcaagcactgctccaacctcaaatgtcatcacatgagcagtatatcctccatctattaaaattatcactatatcaaacttcatttca 44975320  T
Q  355 cagcaacaataataaattagctcaatcggttatagcataaatgtttttcatataaatgtttatgtataagttatttctattactagaagtataagaaaaa 454  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44975319 cagcaacaataacaaattagctcaatcggttatagcataaatgtttttcatataaatgtttatgtataagttatttctattactagaagtataagaaaaa 44975220  T
Q  455 ttgtttcatataagctaatatcatgaacatgtcataagtagtttctataaactctcccaaaatgtatgacaagataagattaaataggtagatccaaata 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44975219 ttgtttcatataagctaatatcatgaacatgtcataagtagtttctataaactctcccaaagtgtatgacaagataagattaaataggtagatccaaata 44975120  T
Q  555 tagcctaagagtgataatat 574  Q
    ||||||||||||||||||||    
T  44975119 tagcctaagagtgataatat 44975100  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 44973876 - 44973707
Alignment:
Q  142 tatgcagcagcagcatcaacttcgcctctcatcaaactcccaaaa---tcctcatgaacagtagtggattctattattattatctcagtctgattgaagc 238  Q
    ||||||||||||||||| |||| ||||||||||| ||| ||||||   ||  || |||||||||  |||||||  || |||  ||||||||||||||| |    
T  44973876 tatgcagcagcagcatcgactttgcctctcatcagacttccaaaagaatcgccacgaacagtagcagattctaacat-att--ctcagtctgattgaaac 44973780  T
Q  239 agtatataggagcctgccaatgcggatcctcaagcactgctccaacctcaaatgtcatcacatgagcagtata 311  Q
    |||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973779 agtattcaggagcctgccattgcgcatcctcaagcactgctccaacctcaaatgtcatcacatgagcagtata 44973707  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 436
Target Start/End: Original strand, 32703065 - 32703099
Alignment:
Q  402 tcatataaatgtttatgtataagttatttctatta 436  Q
    ||||||||||||||||||||||| |||||||||||    
T  32703065 tcatataaatgtttatgtataagctatttctatta 32703099  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 43116589 - 43116539
Alignment:
Q  384 ttatagcataaatgtttttcatataaatgtttatgtataagttatttctat 434  Q
    ||||||||||||||||| ||||| || ||||||||| |||| |||||||||    
T  43116589 ttatagcataaatgtttatcatacaagtgtttatgtgtaagctatttctat 43116539  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 433
Target Start/End: Original strand, 23785162 - 23785213
Alignment:
Q  384 ttatagcataaatgtttttcatataa--atgtttatgtataagttatttcta 433  Q
    ||||||||||||||||| ||||||||  ||| ||||| ||||||||||||||    
T  23785162 ttatagcataaatgtttatcatataaatatgcttatgcataagttatttcta 23785213  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 40087425 - 40087365
Alignment:
Q  246 aggagcctgccaatgcggatcctcaagcactgctccaacctcaaatgtcatcacatgagca 306  Q
    ||||||||||||||||  ||| || |||||||| |||||||||||||||||||||||||||    
T  40087425 aggagcctgccaatgctcatcatccagcactgcaccaacctcaaatgtcatcacatgagca 40087365  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 40078103 - 40078048
Alignment:
Q  246 aggagcctgccaatgcggatcctcaagcactgctccaacctcaaatgtcatcacat 301  Q
    ||||||||||||||| | ||| || || ||||||||||||||||||||||||||||    
T  40078103 aggagcctgccaatgagcatcatccagaactgctccaacctcaaatgtcatcacat 40078048  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 29699163 - 29699213
Alignment:
Q  384 ttatagcataaatgtttttcatataaatgtttatgtataagttatttctat 434  Q
    ||||||||||||| ||| ||||||||||| ||||||| |||||||||||||    
T  29699163 ttatagcataaatatttatcatataaatgcttatgtacaagttatttctat 29699213  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 40082224 - 40082166
Alignment:
Q  246 aggagcctgccaatgcggatcctcaagcactgctccaacctcaaatgtcatcacatgag 304  Q
    ||||||||||||||| | ||| || || ||||||||||||||||||||||| |||||||    
T  40082224 aggagcctgccaatgggcatcatccagaactgctccaacctcaaatgtcattacatgag 40082166  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 420
Target Start/End: Complemental strand, 7712171 - 7712135
Alignment:
Q  384 ttatagcataaatgtttttcatataaatgtttatgta 420  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  7712171 ttatagcataaatgattttcatataagtgtttatgta 7712135  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 45516665 - 45516716
Alignment:
Q  384 ttatagcataaatgtttttcat-ataaatgtttatgtataagttatttctat 434  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  45516665 ttatagcataaatgtttatcatgataaatgtttatgtataagttattcctat 45516716  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 19422345 - 19422377
Alignment:
Q  402 tcatataaatgtttatgtataagttatttctat 434  Q
    ||||||||||| |||||||||||||||||||||    
T  19422345 tcatataaatgcttatgtataagttatttctat 19422377  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 27321974 - 27321942
Alignment:
Q  402 tcatataaatgtttatgtataagttatttctat 434  Q
    |||||||| ||||||||||||||||||||||||    
T  27321974 tcatataagtgtttatgtataagttatttctat 27321942  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 27481455 - 27481405
Alignment:
Q  384 ttatagcataaatgtttttcatataaatgtttatgtataagttatttctat 434  Q
    ||||||||||||||||| | |||||| |||||||||||||| |||||||||    
T  27481455 ttatagcataaatgtttattatataagtgtttatgtataagctatttctat 27481405  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 1431469 - 1431422
Alignment:
Q  384 ttatagcataaatgtttttcatataaatgtttatgtataagttatttc 431  Q
    ||||||||||| || || |||||||| |||||||||||||||||||||    
T  1431469 ttatagcataagtgcttatcatataagtgtttatgtataagttatttc 1431422  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 39505866 - 39505912
Alignment:
Q  384 ttatagcataaatgtttttcatataaatgtttatgtataagttattt 430  Q
    ||||||||||||||||| |||  ||| ||||||||||||||||||||    
T  39505866 ttatagcataaatgtttatcaagtaagtgtttatgtataagttattt 39505912  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 436
Target Start/End: Original strand, 8472036 - 8472070
Alignment:
Q  402 tcatataaatgtttatgtataagttatttctatta 436  Q
    |||||||||||||||||||| ||||||||||||||    
T  8472036 tcatataaatgtttatgtatgagttatttctatta 8472070  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 37063235 - 37063185
Alignment:
Q  384 ttatagcataaatgtttttcatataaatgtttatgtataagttatttctat 434  Q
    |||||||||||||| || ||||||||||| ||||||||||  |||||||||    
T  37063235 ttatagcataaatgcttgtcatataaatgcttatgtataaactatttctat 37063185  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 434
Target Start/End: Original strand, 20713586 - 20713615
Alignment:
Q  405 tataaatgtttatgtataagttatttctat 434  Q
    ||||||||||||||||||||||||||||||    
T  20713586 tataaatgtttatgtataagttatttctat 20713615  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 9942 - 9886
Alignment:
Q  378 aatcggttatagcataaatgtttttcatataaatgtttatgtataagttatttctat 434  Q
    ||||| |||||| ||||||| || |||||||  || |||||||||||||||||||||    
T  9942 aatcgcttatagaataaatgcttatcatataggtgcttatgtataagttatttctat 9886  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 32975887 - 32975935
Alignment:
Q  384 ttatagcataaatgtttttcatataaatgtttatgtataagttatttct 432  Q
    |||||||||||  | || |||||||| ||||||||||||||||||||||    
T  32975887 ttatagcataagcgcttctcatataagtgtttatgtataagttatttct 32975935  T

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