View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7347_high_11 (Length: 574)
Name: NF7347_high_11
Description: NF7347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7347_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Original strand, 48638373 - 48638915
Alignment:
| Q |
16 |
atgaaacgaacaccagtggctcgtctgatcgaaagcgcaaagcaaaaaatatttcaacaagtacaaagatttgcgacattcctaaatggtgtgccataca |
115 |
Q |
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| T |
48638373 |
atgaaacgaacaccagtggctcgtctgatcgaaagcgcaaagcaaaaaatatttcaacaagtacaaagattcgcgacattcctaaatggtgtgccataca |
48638472 |
T |
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| Q |
116 |
aggaacacctttccgagtggtaagcaacattttatattatacctgttgatatannnnnnnnngtattctcccctaatgcattcccttaagacacaatatt |
215 |
Q |
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| T |
48638473 |
aggaacacctttccgagtggtaagcaacattttatattatacctgttgatatatttttttttgtattctcccctaatgcattcccttaagacacaatatt |
48638572 |
T |
|
| Q |
216 |
tttatggacagaagaaagcctttttgaaacggtctagaaaaataattccatctcttatgttacataatgtatttctgacgcattatttccagaaaagggg |
315 |
Q |
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| T |
48638573 |
tttatggacagaagaaagcctttttgaaacggtctagaaaaataattccatcttttatgttacataatgtatttctgatgcattatttccagaaaagggg |
48638672 |
T |
|
| Q |
316 |
gctttcatgtgggttgtcatacccagtcaagaaaagtttaccggccacctggatggcaattcaaactgagaatacccctcaatcatgttttagacaatga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48638673 |
gctttcatgtgggttgtcatacccagtcaagaaaagtttaccggccacctggatggcaattcaaactgagaatacccctcaatcatgttttatacaatga |
48638772 |
T |
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| Q |
416 |
attcatcttcagactaagaaaaaactatttattccattaccaattttgccctatc-ttttttatttatttatgtggatctgagtaacacactaacacgtt |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48638773 |
attcatcttcagactaagaaaaaactatttattccattaccaattttgccctatctttttttatttatttatgtggatctgagtaacacactaacacgtt |
48638872 |
T |
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| Q |
515 |
taatttatacaggatgctttcaaatacctaagaggagattgtt |
557 |
Q |
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| T |
48638873 |
taatttatacaggatgctttcaaatacctaagaggagattgtt |
48638915 |
T |
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